| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,320,699 – 1,320,751 |
| Length | 52 |
| Max. P | 0.998337 |
| Location | 1,320,699 – 1,320,751 |
|---|---|
| Length | 52 |
| Sequences | 4 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 98.08 |
| Shannon entropy | 0.03120 |
| G+C content | 0.39904 |
| Mean single sequence MFE | -12.95 |
| Consensus MFE | -11.60 |
| Energy contribution | -11.85 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.651328 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1320699 52 + 22422827 CGAAAGGGUAAUAUUGUUAUAUUUUUCUGGCUUAGGCUCAAGCCAAAGCUUC ....((((.(((((....))))).))))(((((.(((....))).))))).. ( -12.50, z-score = -1.74, R) >droYak2.chrX 1230160 52 + 21770863 CGAAAGGGUAAUAUUGUUAUAUUUUUCUGGCUUAGGCUCAAGCCAGAGGUUC (....).................((((((((((......))))))))))... ( -13.50, z-score = -2.11, R) >droSec1.super_10 1143883 52 + 3036183 CGAAAGGGUAAUAUUGUUAUAUUUUUCUGGCUUAGGCUCAAGCCAGAGCUUC (....)..................(((((((((......))))))))).... ( -12.90, z-score = -1.47, R) >droSim1.chrX 1006451 52 + 17042790 CGAAAGGGUAAUAUUGUUAUAUUUUUCUGGCUUAGGCUCAAGCCAGAGCUUC (....)..................(((((((((......))))))))).... ( -12.90, z-score = -1.47, R) >consensus CGAAAGGGUAAUAUUGUUAUAUUUUUCUGGCUUAGGCUCAAGCCAGAGCUUC (....)..................(((((((((......))))))))).... (-11.60 = -11.85 + 0.25)
| Location | 1,320,699 – 1,320,751 |
|---|---|
| Length | 52 |
| Sequences | 4 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 98.08 |
| Shannon entropy | 0.03120 |
| G+C content | 0.39904 |
| Mean single sequence MFE | -12.72 |
| Consensus MFE | -12.76 |
| Energy contribution | -12.57 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.06 |
| Mean z-score | -3.67 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.33 |
| SVM RNA-class probability | 0.998337 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1320699 52 - 22422827 GAAGCUUUGGCUUGAGCCUAAGCCAGAAAAAUAUAACAAUAUUACCCUUUCG ((((.(((((((((....)))))))))..(((((....)))))....)))). ( -10.90, z-score = -2.52, R) >droYak2.chrX 1230160 52 - 21770863 GAACCUCUGGCUUGAGCCUAAGCCAGAAAAAUAUAACAAUAUUACCCUUUCG (((..(((((((((....)))))))))..(((((....))))).....))). ( -13.00, z-score = -4.74, R) >droSec1.super_10 1143883 52 - 3036183 GAAGCUCUGGCUUGAGCCUAAGCCAGAAAAAUAUAACAAUAUUACCCUUUCG ((((.(((((((((....)))))))))..(((((....)))))....)))). ( -13.50, z-score = -3.71, R) >droSim1.chrX 1006451 52 - 17042790 GAAGCUCUGGCUUGAGCCUAAGCCAGAAAAAUAUAACAAUAUUACCCUUUCG ((((.(((((((((....)))))))))..(((((....)))))....)))). ( -13.50, z-score = -3.71, R) >consensus GAAGCUCUGGCUUGAGCCUAAGCCAGAAAAAUAUAACAAUAUUACCCUUUCG (((..(((((((((....)))))))))..(((((....))))).....))). (-12.76 = -12.57 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:06:00 2011