| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,319,425 – 1,319,561 |
| Length | 136 |
| Max. P | 0.781112 |
| Location | 1,319,425 – 1,319,561 |
|---|---|
| Length | 136 |
| Sequences | 5 |
| Columns | 154 |
| Reading direction | forward |
| Mean pairwise identity | 72.93 |
| Shannon entropy | 0.47013 |
| G+C content | 0.60857 |
| Mean single sequence MFE | -50.36 |
| Consensus MFE | -30.84 |
| Energy contribution | -30.64 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.781112 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1319425 136 + 22422827 AGGGAAGCGCGAGGGGAGCUCAGCGAAAGCCACCGAGGCGAGGCGAG-----GAGCCUAUCAGUAAUCAUCCAUAGCAUACGGAAGCGGCGUCAC--------AUACAUAGGUGUCGCCAGGAUAUCUGUGGGAUGGAUGAGGUGCCGC----- ......((((((..((.((((..((...(((.....)))....))..-----)))))).)).....((((((((....((((((...((((.(((--------........))).))))......))))))..)))))))).))))...----- ( -49.90, z-score = -1.71, R) >droSim1.chrX 1005199 132 + 17042790 AGGGAAACGCAAGGGGAACGCUGCGCAAGCCACAGAGGCGAGGCGAG-----ACGCCUAUCAGUAAUCAUCCGUAGCACGCGGAAGCGGCGUCAC--------AUACGUAGGUGUCGCCAGGAUAUCUGUGAGGUGGUAUCUGUC--------- ..(....)....(((...((((((....))((((((.((.(((((..-----.)))))....))....((((.......((....))((((.(((--------........))).)))).)))).)))))).))))...)))...--------- ( -47.40, z-score = -1.02, R) >droSec1.super_10 1142656 116 + 3036183 -------CGCGAGGAGAACGCAGCGCAAGCCACAGAGGCGAGGCGAGGCGAGACGCCUAUCAGUAAUCAUCCAUAGCACGCGGAAGCGGCGUCAC--------AUACAUAGGUGUCGCCAGGAUAUCUGUC----------------------- -------.((........(((..(((..(((.....)))...)))..))).(((((((((...............((.(((....)))))((...--------..)))))))))))))(((.....)))..----------------------- ( -41.30, z-score = -1.97, R) >droYak2.chrX 1228884 149 + 21770863 AGGGUGGCGCGAGGGGAACGCGGUAAAAGCCACCGAGGCGAGGCGAG-----GUGCCUAUCAGCAAUCAUCCAUAGCUCGCGGAAGCGGCGACACGAGCAGGAACACAUAGGUGUCGCCGGGGUAUCUGUGGGGCGGAUGUGGGUGGGUGUUGC ..(((((((((.......))).......)))))).(((((.......-----.)))))..(((((..((((((((((((((....))((((((((................)))))))).)))).((((.....))))))))))))..))))). ( -60.80, z-score = -1.81, R) >droEre2.scaffold_4644 1305284 144 + 2521924 AGGGAAGCGCGAGGGGAACGCAGCGAAAGCCACCGAUGCGAGGCGGG-----GCGCCUAUCAGCAAUCAUCCAUAGGAUGCGGAAGCGGCGUCAGGAGCAGGAACACAUAGGUGUCGCCAGCGUGUCAGUGGGCGGAAUGGGCUGUCGC----- ........((((.((...(((.((....))(((.((((((.((((.(-----(((((...........((((...))))((....))))))))..........((((....))))))))..)))))).))).))).......)).))))----- ( -52.40, z-score = -0.02, R) >consensus AGGGAAGCGCGAGGGGAACGCAGCGAAAGCCACCGAGGCGAGGCGAG_____GCGCCUAUCAGUAAUCAUCCAUAGCACGCGGAAGCGGCGUCAC________AUACAUAGGUGUCGCCAGGAUAUCUGUGGGGUGGAUG_GGUG__G______ .......(((..(((((..((.((....))....((....(((((........))))).)).))..)).)))......(((....))))))...............((((((((((.....))))))))))....................... (-30.84 = -30.64 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:59 2011