Locus 12632

Sequence ID dm3.chrX
Location 1,297,217 – 1,297,322
Length 105
Max. P 0.629858
window17369

overview

Window 9

Location 1,297,217 – 1,297,322
Length 105
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 97.49
Shannon entropy 0.03433
G+C content 0.48269
Mean single sequence MFE -27.47
Consensus MFE -24.64
Energy contribution -24.64
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.90
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.29
SVM RNA-class probability 0.629858
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 1297217 105 + 22422827
GUGGCUAGCAAAGUGCCCAUAAACUAUGUUGUUCUACGGUGAUUGAAUCGGAAAGGCUCUUCCCCU--GCUCUCCCCUCGCAAAAAGACGACAUAGUUUGACUGACC
(.(((.........)))).((((((((((((((.....((((.......((..((((.........--)).))..)))))).....))))))))))))))....... ( -25.71, z-score =  -1.23, R)
>droSec1.super_10 1120533 105 + 3036183
GUGGCAAGCAAAGUGCCCAUAAACUAUGUUGUUCUACGGUGAUUGAAUCGGAAAGGCUCUUCCCCU--GCUCUCCCCUCGCAAAAAGACGACAUAGUUUGACUGACC
(.((((.......))))).((((((((((((((.....((((.......((..((((.........--)).))..)))))).....))))))))))))))....... ( -26.61, z-score =  -1.43, R)
>droSim1.chrX_random 970427 107 + 5698898
GUGGCAAGCAAAGUGCCCAUAAACUAUGUUGUUCUACGGUGAUUGAAUCGGAAAGGCUCUUCCUCUCUGCUCUCCCCUCGCAAAAAGACGACAUAGUUUGACUGACC
(.((((.......))))).((((((((((((((.....((((..((..((((.(((.....))).))))...))...)))).....))))))))))))))....... ( -30.10, z-score =  -2.33, R)
>consensus
GUGGCAAGCAAAGUGCCCAUAAACUAUGUUGUUCUACGGUGAUUGAAUCGGAAAGGCUCUUCCCCU__GCUCUCCCCUCGCAAAAAGACGACAUAGUUUGACUGACC
(.(((.........)))).((((((((((((((.....((((.......((..((((...........)).))..)))))).....))))))))))))))....... (-24.64 = -24.64 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:56 2011