| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,262,689 – 1,262,742 |
| Length | 53 |
| Max. P | 0.609027 |
| Location | 1,262,689 – 1,262,742 |
|---|---|
| Length | 53 |
| Sequences | 4 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 82.08 |
| Shannon entropy | 0.27696 |
| G+C content | 0.45755 |
| Mean single sequence MFE | -13.46 |
| Consensus MFE | -8.71 |
| Energy contribution | -9.53 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.609027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1262689 53 + 22422827 UCUAUCGGUGGCUAUCGUUGGGAUUGGGAAAACGAUUGGCAAUGGUGAUAAAC ..(((((...(((((((((...........))))).))))..)))))...... ( -11.40, z-score = -1.76, R) >droYak2.chrX 1169802 53 + 21770863 UCUAUCGGUGGCAAUCGUCAGGAUUGGGGCAAUGAUAGGCAAGACUGAUAACU ..(((((((..(((((.....)))))..((........))...)))))))... ( -11.80, z-score = -1.02, R) >droEre2.scaffold_4644 1246289 53 + 2521924 UCUAUCGGUGGCUAUCGUCAGGAUUGGGGCAACGAUAGGCAAGGCUGAUAACU ..((((((((.(((((((.............))))))).)...)))))))... ( -14.52, z-score = -1.60, R) >droSec1.super_10 1086204 53 + 3036183 UCUAUCAGUGGUUAUCGUUGGGAUUGGGAAAACGAUUACCAAUGGUGAUAAAC ..........((((((((((((((((......))))).))))))))))).... ( -16.10, z-score = -3.27, R) >consensus UCUAUCGGUGGCUAUCGUCAGGAUUGGGAAAACGAUAGGCAAGGCUGAUAAAC ..(((((((.(((((((((...........)))))).)))...)))))))... ( -8.71 = -9.53 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:54 2011