| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,624,754 – 9,624,870 |
| Length | 116 |
| Max. P | 0.521080 |
| Location | 9,624,754 – 9,624,870 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 71.48 |
| Shannon entropy | 0.51913 |
| G+C content | 0.47882 |
| Mean single sequence MFE | -33.94 |
| Consensus MFE | -14.88 |
| Energy contribution | -16.60 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.521080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9624754 116 - 23011544 AUUGGGCAGAUAGAUAUAGGGUCCGCUUUGUGUCA-AUAGAAGUGGGACAGCUGAAAUCAAAGUUUGCGCCGGUCGAUAUUCGCCGGAUCGGCUCUCUGGCGGAAACACUUUGGACU ...(..((((..(((((((((....))))))))).-......((.(((.((((((.......(....).((((.((.....)))))).)))))).))).))(....)..))))..). ( -34.30, z-score = -0.23, R) >droYak2.chr2L 12309727 116 - 22324452 AUUGCGGAGAUAGUUAUAGUUUCCGCAUUGUGUAA-AUAGAACUGUGCCAGCUGAAAUCCAAGUUUGCGCAGGUCGAUAUUCGCCGGAUCGACUCUCCGGCGGAAUCACUGUGUAUC ..(((((((((.......)))))))))....(((.-((((..((((((.((((........)))).))))))...(((.(((((((((.......)))))))))))).)))).))). ( -44.30, z-score = -4.21, R) >droSec1.super_3 5071240 116 - 7220098 AUUGGGGAGAUAGAUAUAGGGUCCGCUUUGUGUUA-AUAGAAGUGGGACAGCUGAAAUCAAAGUUUGCGCCGGUCGAUAUUCGCCGGAUCGGCUCUCUGGCGGAAACACUUUGGACC ...................((((((....(((((.-......((.(((.((((((.......(....).((((.((.....)))))).)))))).))).))...)))))..)))))) ( -33.30, z-score = -0.09, R) >droSim1.chr2L 9397504 116 - 22036055 AUUGGGGAGAUAGAUAUAGAGUCCGCUUUGUGUUA-AUAGAAGUGGGACAGCUGAAAUCAAAGUUUGCGCCGGUCGAUAUUCGCCGGAUCGGCUCUCUGGCGGAAACACUUUGGACC .(..(((.....(((((((((....))))))))).-......((.(((.((((((.......(....).((((.((.....)))))).)))))).))).))(....).)))..)... ( -34.00, z-score = -0.52, R) >droGri2.scaffold_15252 13651547 105 + 17193109 AUUGACCACUUGGCUUUUCUGACAUUUGUCCGCUGCACUUUACUGUCUGCCCUAAUCUCAAAGCCAAUA-GGGUCGGCAUUUUCCAUUUCCUCUUUC-----GAAAUGUUU------ .((((((..((((((((...(((....))).((.(((......)))..)).........))))))))..-.)))))).......((((((.......-----))))))...------ ( -23.80, z-score = -2.30, R) >consensus AUUGGGGAGAUAGAUAUAGGGUCCGCUUUGUGUUA_AUAGAAGUGGGACAGCUGAAAUCAAAGUUUGCGCCGGUCGAUAUUCGCCGGAUCGGCUCUCUGGCGGAAACACUUUGGACC ............(((((((((....))))))))).....((((((.................(((.((....)).))).(((((((((.......)))))))))..))))))..... (-14.88 = -16.60 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:36 2011