| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,230,298 – 1,230,407 |
| Length | 109 |
| Max. P | 0.905468 |
| Location | 1,230,298 – 1,230,407 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 68.48 |
| Shannon entropy | 0.59985 |
| G+C content | 0.42504 |
| Mean single sequence MFE | -23.08 |
| Consensus MFE | -11.35 |
| Energy contribution | -11.68 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905468 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1230298 109 - 22422827 UACAAAGAAUAUUCCUCCCAGAAAACGAAUUCAGGUAGUAGUGCCUCCCUUCGAGCGUACUUAUCGAGCUUCUAGAGGCCAUUAAGAUUAAUGACUAGUUAAUCAACCU ....................(((......)))((((..(((((((((.....((((...........))))...)))).))))).(((((((.....))))))).)))) ( -20.20, z-score = -0.52, R) >droEre2.scaffold_4644 1222287 109 - 2521924 UACAAAUAGUAUUUAUCCCAUAUAACGAUUCCAGGUACCAAUGCCUCUCUUUGAGCGUACUUAUCGAACUUCUAGAGGCCAUUAAGAUUAAUGACUAGUUAAUCAACCC .................................(((......((((((....(..((.......))..)....))))))......(((((((.....))))))).))). ( -17.20, z-score = -0.74, R) >droYak2.chrX 1147693 109 - 21770863 UACAAAUGGUAUUUCUCUCAGACAACGAUUCCAGGUACCAACGCCUCCGUUUGGGGGUAUUUAUCGAACUUCUAGAGGCCAUUAAGAUUAAUGACUAGUUAAUCAACCU ....((((((....((((.(((...((((....(....)...((((((....))))))....))))....)))))))))))))..(((((((.....)))))))..... ( -25.60, z-score = -1.19, R) >droSec1.super_10 1063459 92 - 3036183 ----------------CACAAAGAGU-AUUCCACGUAGUAGUGCCUCCCUUCGAGCGUACUUAUCGAGCUUCUAGAGGCCAUUAAGAUUAAUGACUAGUUAAUCAACCU ----------------..........-......((....((((((((.....))).)))))...)).((((....))))......(((((((.....)))))))..... ( -16.90, z-score = -0.44, R) >droSim1.chrX 952325 109 - 17042790 CACAAAGAGUAUUCCUCCCAGAUAACAAUUCCACGUAGUAGUGCCUCCCUUCGAGCGUACUUAUCGAGCUUCUGGAGGCCAUUAAGAUUAAUGACUAGUUAAUCAACCG ......(((.....))).....................((((((((((....((((...........))))..))))).))))).(((((((.....)))))))..... ( -21.30, z-score = -0.97, R) >droAna3.scaffold_12929 1666983 86 + 3277472 ----------------UUCGAAUAAC--CUCCACUCCAUCGUUGGCCACUCU-----UUCUGGCCAAGUUGGGUGGAGCUGGCCGGAUUAAUGGCCAGUUAAUCAGUCU ----------------...((.((((--((((((.(((.(.(((((((....-----...)))))))).))))))))).((((((......)))))))))).))..... ( -37.30, z-score = -4.53, R) >consensus UACAAA_AGUAUU_CUCCCAGAUAACGAUUCCACGUAGUAGUGCCUCCCUUCGAGCGUACUUAUCGAGCUUCUAGAGGCCAUUAAGAUUAAUGACUAGUUAAUCAACCU ..........................................((((((.(((((.........))))).....))))))......(((((((.....)))))))..... (-11.35 = -11.68 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:52 2011