| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,215,662 – 1,215,752 |
| Length | 90 |
| Max. P | 0.528994 |
| Location | 1,215,662 – 1,215,752 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 58.26 |
| Shannon entropy | 0.72253 |
| G+C content | 0.42229 |
| Mean single sequence MFE | -22.04 |
| Consensus MFE | -8.78 |
| Energy contribution | -9.58 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.68 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.528994 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1215662 90 + 22422827 CGCGAGCUUAGCUAACUCA--CGCAAUU-UGUUCGUUUUUUGACAACAA--AAUUAAUAGCAGCUGCGUUGUUAUAUUUGUUGUUGUUGUUGAUG------ .((((((...((.......--.))....-.))))))((..(((((((((--.....((((((((...)))))))).....)))))))))..))..------ ( -21.30, z-score = -0.62, R) >droSim1.chrX 962854 96 + 17042790 CGCGAGCUUAGCUAACUCA--CGCAAUU-UGUUCGUUUUUUGACAACAA--AAUUAAUAGCAGCUGCGUUGCUGUUGCCCUUGCUGUUGUUGUUGUUGAUG .((((((...((.......--.))....-.))))))...(..(((((((--...(((((((((..(((.......)))..))))))))))))))))..).. ( -27.00, z-score = -1.46, R) >droSec1.super_10 1048641 96 + 3036183 CGCGAGCUUAGCUAACUCA--CGCAAUU-UGUUCGUUUUUUGACAACAA--AAUUAAUAGCAGUUGCGUUGCUGUUGCCCUUGCUGUUGUUGUUGUUGAUG .((((((...((.......--.))....-.))))))...(..(((((((--...(((((((((..(((.......)))..))))))))))))))))..).. ( -27.00, z-score = -1.66, R) >droAna3.scaffold_12929 1650938 89 - 3277472 CGCGAGAUUAUCUACGCUAAGCGCUAUU-CGCUCUGUCUCUUUCACGCU--AAUUUUUUGGGGCUGCCCCCCCUCCCCCAACUCUCCUGUAG--------- .(((.((........((..((((.....-))))..)).....)).))).--......((((((..(......)..))))))...........--------- ( -17.02, z-score = -0.66, R) >droGri2.scaffold_15081 1802036 94 - 4274704 CGCAAGCCAAAUAAAUAAAACAAUAACAGCGCUCGGCUUUCAAAGUUAUUGAGGUAACAUUUAUUGUGU-GUUGUUCUUAUUGUUGUUGCUGCUG------ .(((.((.((........((((((((((((((...((((.(((.....))))))).(((.....)))))-)))))...))))))).)))))))..------ ( -17.90, z-score = 0.33, R) >consensus CGCGAGCUUAGCUAACUCA__CGCAAUU_UGUUCGUUUUUUGACAACAA__AAUUAAUAGCAGCUGCGUUGCUGUUCCCAUUGCUGUUGUUGUUG______ .((((((.......................))))))....((((((((.......((((((((.....))))))))........))))))))......... ( -8.78 = -9.58 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:50 2011