| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,213,199 – 1,213,289 |
| Length | 90 |
| Max. P | 0.638248 |
| Location | 1,213,199 – 1,213,289 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 77.53 |
| Shannon entropy | 0.31532 |
| G+C content | 0.50414 |
| Mean single sequence MFE | -16.28 |
| Consensus MFE | -9.96 |
| Energy contribution | -9.85 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.638248 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1213199 90 - 22422827 AAUGCAAACUUUUGAAUCCCCCCCAUGGCAUGUAUGUAAGUUCAGAUGCAAAAGCACCCUUUUGCUCCCCUUUUUGCCCCACAUCCCCCG ..........................((.((((..(((((.......(((((((....))))))).......)))))...)))).))... ( -13.64, z-score = -1.56, R) >droSec1.super_10 1046274 82 - 3036183 AAUGCAAACUUUUGAAUCUCCCCCCCCA-------GUAAGUUCAGAUGCAAAAGCACCCUUUUGCUUCCC-UUUUGCCCCACAUCCUCCG ...(((((..((((((.((..(......-------)..)))))))).(((((((....))))))).....-.)))))............. ( -13.60, z-score = -3.54, R) >droEre2.scaffold_4644 1204993 84 - 2521924 AAUGCAAACUUUUGAAUCUCCCCCCGGGG--GAACGUAAGUUCAGAGGCAAAGGCACCCUUUUGCUCCCC-UCUCGUCCUUCCCUCU--- ...(((((((((((..((((((....)))--((((....)))))))..))))))......))))).....-................--- ( -21.60, z-score = -0.63, R) >consensus AAUGCAAACUUUUGAAUCUCCCCCCCGG___G_A_GUAAGUUCAGAUGCAAAAGCACCCUUUUGCUCCCC_UUUUGCCCCACAUCCUCCG ...((((...(((((((......................))))))).(((((((....)))))))........))))............. ( -9.96 = -9.85 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:49 2011