| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,211,605 – 1,211,725 |
| Length | 120 |
| Max. P | 0.845915 |
| Location | 1,211,605 – 1,211,725 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.31 |
| Shannon entropy | 0.25643 |
| G+C content | 0.40468 |
| Mean single sequence MFE | -26.65 |
| Consensus MFE | -23.16 |
| Energy contribution | -23.85 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.845915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1211605 120 + 22422827 GUAAUUGCUGUCAAAAACGAUUGCCGAUGGACGUUUUGAAGGACUCCAAUGGCUGCUACCCUGCUAUUAUUCGCCAUCGAUCAUUCUGUACUUCGAUAUCAAUUAUUAAGAACCAUCGAA (((((((.(......).)))))))((((((...((((((.((.....((((((.........)))))).....))(((((............)))))........)))))).)))))).. ( -25.80, z-score = -1.07, R) >droSim1.chrX 958972 120 + 17042790 GUAAUUGCGGUCAAAAACGAUUGCCGAUGGACGUUUUGAAGGACUCUAAUGGCUGCUACCCUGCUAUUAUUCGCCAUCGAUCAUUCUGUACUUCGAUAUCAAUUAUUAAGAACCAUCGAA ......((((((......))))))((((((...((((((.((....(((((((.........)))))))....))(((((............)))))........)))))).)))))).. ( -29.40, z-score = -1.81, R) >droSec1.super_10 1044783 120 + 3036183 GUAAUUGCUGUUAAAAACGAUUGCCGAUGGACGUUUUGAAGGACUCUAAUGGCUGCUACCCUGCUAUUAGUCGCCAUCGAUCAUUCUGUACUUCGAUAUCAAUUAUUAAGAACCAUCGAA (((((((.(......).)))))))((((((...((((((.((...((((((((.........))))))))...))(((((............)))))........)))))).)))))).. ( -31.10, z-score = -2.73, R) >droEre2.scaffold_4644 1203361 97 + 2521924 -----------------------AUGUUGGACAUUUUAGGGGGCUCUAAUGGCUGCUCCCCUGUUAUUAGUCGCCAUCGAUCAUUCUGUACUUCGAUAUCAAUUAUUAAGAACCAUCAAA -----------------------.((.(((......((((((((..........)).))))))(((.((((.(..(((((............)))))..).)))).)))...))).)).. ( -20.30, z-score = -0.31, R) >consensus GUAAUUGCUGUCAAAAACGAUUGCCGAUGGACGUUUUGAAGGACUCUAAUGGCUGCUACCCUGCUAUUAGUCGCCAUCGAUCAUUCUGUACUUCGAUAUCAAUUAUUAAGAACCAUCGAA (((((((..........)))))))((((((...((((((.((...((((((((.........))))))))...))(((((............)))))........)))))).)))))).. (-23.16 = -23.85 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:48 2011