| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,210,709 – 1,210,817 |
| Length | 108 |
| Max. P | 0.920761 |
| Location | 1,210,709 – 1,210,817 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 77.54 |
| Shannon entropy | 0.39908 |
| G+C content | 0.48204 |
| Mean single sequence MFE | -24.44 |
| Consensus MFE | -11.82 |
| Energy contribution | -14.30 |
| Covariance contribution | 2.48 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.920761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1210709 108 + 22422827 CUACCCCAAAUGAUCGUGUGUUUGCUACCUCUGGAGUCCCCACUUCUCUCGAUUGUUAUUACAGUCGG-UACUCCAUAACUUCGGCCCCUCAUGCAAACGCACCACUAA ...............((((((((((......((((((.((..........((((((....))))))))-.))))))...(....)........))))))))))...... ( -29.00, z-score = -4.27, R) >droSim1.chrX 958089 108 + 17042790 CUACCCCAAAUGAUCGUGUGUCUGCUACGUCUGGAGUCCCCACUUCUCUCGAUUGUUAUUACAGUCGG-AACUGCACAACUUCGGCCCCUCAUGCAAACGCACAACUAA ...............((((((.(((.....(((((((...((.(((...(((((((....))))))))-)).))....)))))))........))).))))))...... ( -26.62, z-score = -2.26, R) >droSec1.super_10 1043868 109 + 3036183 CUACCCCAAAUGAUCGUGUGUCUUCUACGGCUGGAGUCCCCACUUCUCUCGAUUGUUAUUACAGUCGGGAAGUGGACAACUUCGGCCCCUCAUGCAAACGCACAACUAA ...............((((((.......(((((((((..(((((((.(.(((((((....)))))))))))))))...)))))))))..........))))))...... ( -39.73, z-score = -4.68, R) >droYak2.chrX 1128495 83 + 21770863 ------------------------CUACCCCAAAUGAUCGU-CUUCUCACGAUUGUUAUUACAGUCGA-AACUCCACAACAACGGCCUCUCAAGCAAACACACAACUAA ------------------------.....((...(((....-....)))(((((((....))))))).-..............))........................ ( -8.80, z-score = -0.89, R) >droEre2.scaffold_4644 1202511 106 + 2521924 CUACCCCAAAUGAUCGUG--UCUGUCACGUCUGGAGGCCCCACUUCUCUCGUUUGUUAUUACAGUCGA-AACUCCACAACUGCGACCUCUCAAGCAAACACACAACUAA ...(((((...((.((((--.....))))))))).)).............(((((((......((((.-.............))))......))))))).......... ( -18.04, z-score = -0.40, R) >consensus CUACCCCAAAUGAUCGUGUGUCUGCUACGUCUGGAGUCCCCACUUCUCUCGAUUGUUAUUACAGUCGG_AACUCCACAACUUCGGCCCCUCAUGCAAACGCACAACUAA ...............((((((.(((.......((((......))))...(((((((....)))))))..........................))).))))))...... (-11.82 = -14.30 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:47 2011