| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,209,512 – 1,209,617 |
| Length | 105 |
| Max. P | 0.740407 |
| Location | 1,209,512 – 1,209,617 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 89.74 |
| Shannon entropy | 0.18560 |
| G+C content | 0.50291 |
| Mean single sequence MFE | -34.28 |
| Consensus MFE | -27.34 |
| Energy contribution | -28.18 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740407 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1209512 105 + 22422827 CAUAAUUAGCAUGGAGAUGCUAAUCAAUCGGCCGAUUAAAGCCGCCUGCCUCA-AAAGUUGGCCGCCUAUGGAUAACUUUUUCCCUGCAUACUUGUGGGGGAGCCG ((((((((((((....))))))))....(((((((((...((.....))....-..)))))))))..))))........((((((..((....))..))))))... ( -32.40, z-score = -1.04, R) >droSim1.chrX 942573 105 + 17042790 CAUAAUUAGCAUGGAGAUGCUAAUCAAUCGGCCGAUUAAAGCCGCCUGCUCCA-AAAGUUGGCGGCCUAUUGAUCACUGUUUCCCUGCAUACUUGUGGGGGAACCG ....((((((((....)))))))).........((((((.((((((.(((...-..))).))))))...))))))...(((((((..((....))..))))))).. ( -41.50, z-score = -4.04, R) >droSec1.super_10 1042679 105 + 3036183 CAUAAUUAGCAUGGAGAUGCUAAUCAAUCGGCCGAUUAAAGCCGCCUGCUCCA-AAAGUUGGCGGCCUAUGGAUCACUGUUUCCCUGCAUACUUGUGGGGGAACCG ....((((((((....)))))))).........((((...((((((.(((...-..))).)))))).....))))...(((((((..((....))..))))))).. ( -40.10, z-score = -3.21, R) >droYak2.chrX 1127263 103 + 21770863 CAUAAUUAGCGCGGAGAUGCUAAUCAAUCGGCCGAUUAAAGCCGCCUGCUC-A-AAAGUCUGUGGCCUACGGAUCACU-UUUCCCUGCAUACUUGUGGGCGAACGG ..((((..((.(((.(((....)))..)))))..))))...(((..(((((-(-.((((.((..(.....(((.....-..))))..)).)))).))))))..))) ( -27.60, z-score = 0.01, R) >droEre2.scaffold_4644 1201303 105 + 2521924 CAUAAUUAGCAUGAAGAUGCUAAUCAAUCGGCCGCUUAAAGCCGCCCCUGCCACAAAGUUGCCGGCCUACGGAUCACU-UUUUCCUGCAUACUUGUGGGGGAACAG ....((((((((....)))))))).....(((.((.....)).))).((.((((((.(((((.(.....)(((.....-...))).))).)))))))).))..... ( -29.80, z-score = -0.94, R) >consensus CAUAAUUAGCAUGGAGAUGCUAAUCAAUCGGCCGAUUAAAGCCGCCUGCUCCA_AAAGUUGGCGGCCUAUGGAUCACU_UUUCCCUGCAUACUUGUGGGGGAACCG ....((((((((....)))))))).........((((...((((((.((........)).)))))).....))))....((((((..((....))..))))))... (-27.34 = -28.18 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:46 2011