| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,208,269 – 1,208,384 |
| Length | 115 |
| Max. P | 0.988848 |
| Location | 1,208,269 – 1,208,384 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 77.25 |
| Shannon entropy | 0.44070 |
| G+C content | 0.55314 |
| Mean single sequence MFE | -44.08 |
| Consensus MFE | -23.46 |
| Energy contribution | -25.22 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.34 |
| SVM RNA-class probability | 0.988848 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1208269 115 - 22422827 GCGUUGGCAGGGUAUUUAUCUCAUGGGAGCACGACAGGAUCGUGGGUGUUUUGGCCGGCCGGCG-ACUUGGCUUAGCUUAAUUACUAACUGAGGGGAUUAGGCCUCUGCUGGACGC ((((..(((((((....(((((.(.((..(((((.....)))))((((....(((.((((((..-..))))))..)))....))))..)).).)))))...))).))))..).))) ( -40.30, z-score = -1.25, R) >droSim1.chrX 941257 114 - 17042790 GCGUUGGCAGGGUAUUUAUCUCUUGGGAGCACGACAGGAUCGUGGGUG-UUUGGCCGGCCGGCU-ACUUGGCUUGGCUUAAUUACUAACUGAGGGGAUUAGGCCUCUGCUGGACGC ((((..(((((((....(((((((.((..(((((.....)))))((((-...((((((((((..-..))))).)))))....))))..)).)))))))...))).))))..).))) ( -47.90, z-score = -3.39, R) >droSec1.super_10 1041360 114 - 3036183 GCGUUGGCAGGGUAUUUAUCUCUUGGGAGCACGACAGGAUCGUGGGUG-UUUGGCCGGCCGGCU-ACUUGGCUUGGCUUAAUUACUAACUGAGGGGAUUAGGCCUCUGCUGGACGC ((((..(((((((....(((((((.((..(((((.....)))))((((-...((((((((((..-..))))).)))))....))))..)).)))))))...))).))))..).))) ( -47.90, z-score = -3.39, R) >droYak2.chrX 1125872 113 - 21770863 GCGUUGGCAGGGUAUUUAUCUCUUGGGAGCAGGGCAGGAUCGUGGGUG-UUUGGCCAGCGACUUGGCUUAA-UUGCCUUACCAACUGGC-GGGGGGAUUAGGCCUCUGCUUGACGC (((((..(((((........))))).((((((((((((.((((.(((.-....))).))))))))((((((-((.(((..((....)).-.))).))))))))))))))))))))) ( -48.60, z-score = -2.87, R) >droEre2.scaffold_4644 1200006 115 - 2521924 GCGUUGGCAGGGUAUUUAUCUCUUGGGAGGUGGACAGGAUCGUGGGUG-UUUGGCCGGCGACUUGGCUCAGCUUGGCUUAAUUACAAACUGAGGGGAUUAGGCCUCUGCUUGACGC (((((((((((((.((((((((....))))))))((((.((((.(((.-....))).)))))))).(((((.(((.........))).)))))........))).)))).)))))) ( -44.40, z-score = -2.63, R) >droAna3.scaffold_12929 1643173 91 + 3277472 UACUAGACAGACUCUGUGGUCACUGGGAA----GCAGGAUCGUGGGUG-UUUGGCCAGC---------------GGCUUAAUUGCAAUCAUCUGGGAUUAGGCCUCUGUGU----- .......(((((((..(((((.(((....----.))))))))..)).)-))))(((((.---------------(((((((((.((......)).))))))))).))).))----- ( -35.40, z-score = -2.52, R) >consensus GCGUUGGCAGGGUAUUUAUCUCUUGGGAGCACGACAGGAUCGUGGGUG_UUUGGCCGGCCGGCU_ACUUGGCUUGGCUUAAUUACUAACUGAGGGGAUUAGGCCUCUGCUGGACGC (((((((((((.........(((((.........)))))..((.(((......))).))...............(((((((((.((......)).))))))))))))))).))))) (-23.46 = -25.22 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:44 2011