| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,195,714 – 1,195,805 |
| Length | 91 |
| Max. P | 0.645816 |
| Location | 1,195,714 – 1,195,805 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 56.79 |
| Shannon entropy | 0.76876 |
| G+C content | 0.40904 |
| Mean single sequence MFE | -20.87 |
| Consensus MFE | -6.40 |
| Energy contribution | -6.93 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.645816 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1195714 91 + 22422827 UGUCCCCUUCCA-AAAACUAGCCAAAAGUUUGCAU--CUUGGCAUCUAAGCUAA------UUGUUCAGCUUUUAGCAAUGCCAAGAGCCAUGUGGCUGAG------- ............-.....((((((...((..((.(--((((((((....(((((------..(.....)..))))).))))))))))).)).))))))..------- ( -28.10, z-score = -3.00, R) >droEre2.scaffold_4644 1187391 85 + 2521924 --UUGCCUGGCC-AAA-CUAGCCCAAACUU---GU--CUUGGAAUCUAAGCUAA------UUUUGCAGUAUUCAGCAGUGCCAAGAGCCAUUCGGCUGAG------- --..(((.(((.-...-...))).......---.(--(((((...((..(((((------(........))).)))))..)))))).......)))....------- ( -17.20, z-score = 1.21, R) >droSec1.super_10 1028885 91 + 3036183 UGUCCCCUUCCA-AAAACUAGCCAAAAGUUAGCAU--CUUGGCAUCUAAGCUAA------UUGUUCAGUCUUUAGCAAUGCCAAGAGCCAUGUGGCUGAG------- ............-.....((((((.......((.(--((((((((....(((((------...........))))).)))))))))))....))))))..------- ( -25.90, z-score = -2.75, R) >droSim1.chrX_random 936147 91 + 5698898 UGUCCCCUUCCA-AAAACUAGCCAAAAGUUUGCAU--CUUGGCAUCUAAGCUAA------UUGUUCAGUCUUUAGCAAUGCCAAGAGCCAUGUGGCUGAG------- ............-.....((((((...((..((.(--((((((((....(((((------...........))))).))))))))))).)).))))))..------- ( -26.10, z-score = -2.72, R) >droPer1.super_11 1397348 72 - 2846995 --UGCCCUUCCA--GAACCAUUUGAAUUUUCUCUCAAAAUUCAUUUUCGAGUGG------UAUUUUUUUUCUUGG--GUUGGAA----------------------- --..((..((((--((((((((((((...................)))))))))------)........)).)))--)..))..----------------------- ( -15.01, z-score = -1.03, R) >droWil1.scaffold_180702 750666 107 + 4511350 UCUCACAUUUCAUAAACUUAAUAGAGACUUUAAGUGAUUUGUAGUUUUGUCUUGCCCACCUUUUUCUUUUCUUAGCUUUUGGAAAAGCCAUUUUCCAUUUUCUUGCA ....(((..((....((((((........))))))))..)))................................((...(((((((....))))))).......)). ( -12.90, z-score = 0.28, R) >consensus UGUCCCCUUCCA_AAAACUAGCCAAAAGUUUGCAU__CUUGGAAUCUAAGCUAA______UUGUUCAGUUUUUAGCAAUGCCAAGAGCCAUGUGGCUGAG_______ .....................................((((((((....(((((.................))))).))))))))((((....)))).......... ( -6.40 = -6.93 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:41 2011