| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,190,914 – 1,191,015 |
| Length | 101 |
| Max. P | 0.959846 |
| Location | 1,190,914 – 1,191,015 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 96.44 |
| Shannon entropy | 0.06211 |
| G+C content | 0.51683 |
| Mean single sequence MFE | -33.95 |
| Consensus MFE | -32.88 |
| Energy contribution | -32.52 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959846 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1190914 101 + 22422827 UCAGACGUAAUCGAGGAGCGGACGGGGGUACCAGUACCAACCACAUUAUGCUGAUGAUGGCUUAUUAAUUUGCUUUCAUUGCGCCUCUGGCCCGUUCGGAG ..................((((((((((((....))))..(((.....(((.(((((.(((..........))).))))))))....)))))))))))... ( -29.80, z-score = -0.61, R) >droSim1.chrX_random 932383 101 + 5698898 UCAGACGUAAUCGAGGAGCGGACGGGGGCACCAGUACCAACCACAUUAUGCUGAUGAUGGCUUAUUAAUUUGCUUUCAUUGCGCCUCUGGCCCGUUCCGAG ..............(((((((.(((((((....((.......)).....((.(((((.(((..........))).))))))))))))))..)))))))... ( -34.40, z-score = -2.06, R) >droSec1.super_10 1024185 101 + 3036183 UCAGACGUAAUCGAGGAGCGGACGGGGGCACCAGUACCAACCACAUUAUGCUGAUGAUGGCUUAUUAAUUUGCUUUCAUUGCGCCUCUGGCCCGUUCCGAG ..............(((((((.(((((((....((.......)).....((.(((((.(((..........))).))))))))))))))..)))))))... ( -34.40, z-score = -2.06, R) >droYak2.chrX 1107033 101 + 21770863 UCAGACGUAAUCGAGGAGCGGACAGGGGCAUCAGUACCAACCACAUUAUGCUGAUGAUGGCUUAUUAAUUUGCUUUCAUUGCGCCUCUGGCUCGUUCCGAG ..............(((((((.((((((((((((((............)))))))((.(((..........))).)).....)))))))..)))))))... ( -33.60, z-score = -2.30, R) >droEre2.scaffold_4644 1178146 101 + 2521924 UCAGACGCAAUCGCGGAGCGGACAGGGGCAUCAGUUCCAACCACAUUAUGCUGAUGAUGGCUUAUUAAUUUGCUUUCAUUGCGCCUCUGGCCCGUUCCGAG .............((((((((.(((((((((((((..............))))))((.(((..........))).)).....)))))))..)))))))).. ( -37.54, z-score = -2.85, R) >consensus UCAGACGUAAUCGAGGAGCGGACGGGGGCACCAGUACCAACCACAUUAUGCUGAUGAUGGCUUAUUAAUUUGCUUUCAUUGCGCCUCUGGCCCGUUCCGAG ..............(((((((.(((((((....((.......)).....((.(((((.(((..........))).))))))))))))))..)))))))... (-32.88 = -32.52 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:40 2011