| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,188,650 – 1,188,747 |
| Length | 97 |
| Max. P | 0.965267 |
| Location | 1,188,650 – 1,188,747 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 76.01 |
| Shannon entropy | 0.37140 |
| G+C content | 0.49326 |
| Mean single sequence MFE | -25.15 |
| Consensus MFE | -18.80 |
| Energy contribution | -18.93 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965267 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1188650 97 - 22422827 UGCCCCAACUGCCCAACCGAAUUUGCAACCCUCGUCGAU--UCCGAUUCUGUGUCAGCGAAUUCGUCAAAUUGUGCACGAA-UUGUGCAAAAGAGGCGAU .(((.(...........(((((((((.((.(..((((..--..))))...).))..)))))))))........(((((...-..)))))...).)))... ( -24.50, z-score = -1.46, R) >droAna3.scaffold_12929 1624222 84 + 3277472 ---------------UCCGAGCUC-CAACUUGAAGUGGUCCCCCGCCUCCAUGUCAGCGAAUUUGUCAAAUUGUGCACGAAGUUGCAUAAGAGAGGCGAU ---------------..((((...-...))))...........(((((((.((.(((.....))).))..(((((((......)))))))).)))))).. ( -20.70, z-score = -0.77, R) >droSec1.super_10 1021827 89 - 3036183 --------UGCCCCAACCGAAUUUGCAACCCUCGUCGAU--UCCGAUUCUGUGUCAGCGAAUUCGUCAAAUUGUGCACGAA-UUGUGCAUAUGAGGCGAU --------.(((.((..(((((((((.((.(..((((..--..))))...).))..)))))))))......(((((((...-..))))))))).)))... ( -27.50, z-score = -2.66, R) >droSim1.chrX_random 930623 89 - 5698898 --------UGCCCCAACCGAAUUUGCAACCCUCGUCGAU--UCCGAUUCUGUGUCAGCGAAUUCGUCAAAUUGUGCACGAA-UUGUGCAUAAGAGGCGAU --------.(((.(...(((((((((.((.(..((((..--..))))...).))..))))))))).....((((((((...-..))))))))).)))... ( -27.90, z-score = -2.98, R) >consensus ________UGCCCCAACCGAAUUUGCAACCCUCGUCGAU__UCCGAUUCUGUGUCAGCGAAUUCGUCAAAUUGUGCACGAA_UUGUGCAAAAGAGGCGAU ..................((((((((.((.(..((((......))))...).))..))))))))(((...(((((((((....)))))))))..)))... (-18.80 = -18.93 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:39 2011