| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,182,985 – 1,183,085 |
| Length | 100 |
| Max. P | 0.550688 |
| Location | 1,182,985 – 1,183,085 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.08 |
| Shannon entropy | 0.40690 |
| G+C content | 0.44704 |
| Mean single sequence MFE | -28.83 |
| Consensus MFE | -18.36 |
| Energy contribution | -18.52 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.550688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1182985 100 + 22422827 -------UUCACAUUUGUACUUU--UCGAUGUUGCCUACUUUUCUGCGAGGGACAUUUUUAUACAUCUGGCUGCACAAUGCAUACUUUUGGGCAGCAGACAGA--AAUCGU--------- -------..............((--((..(((((((((.......((.(((..............))).))(((.....)))......)))))))))....))--))....--------- ( -20.84, z-score = -0.57, R) >droSim1.chrX_random 928715 111 + 5698898 -------UUUUCAUUUGUAUUUC--UCGAUGUUGCCUACUUUUCUGCGAGGCACAUUUUUCUGCAUCUGGCUGCACGAUGCAUACUUUUGGGCAGCAGACCAAAAGGCCAGACCAUUCGA -------........((((....--..(((((.((((.(........))))))))))....))))(((((((((.....)))..(((((((........)))))))))))))........ ( -30.10, z-score = -1.51, R) >droSec1.super_10 1016325 102 + 3036183 -------UUUUCAUUUGUAAUUC--UCGAUGUUGCCUACUUUUCUGCGAGGCACAUUUUUCUGCAUCUGGCUGCACGAUGCAUACUUUUGGGCAGCAGACAGAGAAAUCGA--------- -------.............(((--((..((((((((((((......)))...........((((((((....)).))))))......)))))))))....))))).....--------- ( -27.00, z-score = -1.17, R) >droYak2.chrX 1099182 108 + 21770863 AAGAGUAUUCGUUUGCGUAUUUU---CGAUGUUGCCUACUUUUCUGCGGGGGUCUUUUUUCUGCAUCUGGCUGCACGAUGCAUACUUUUGGGCAGCAGGCUGAAAAAGCGC--------- ..............((((.((((---((.(((((((((......(((((..(.....)..)))))...(..(((.....)))..)...)))))))))...)))))).))))--------- ( -33.10, z-score = -1.12, R) >droEre2.scaffold_4644 1170176 104 + 2521924 UAAAGUAUUUACGUGUGGCUUUUGCUCGAUGUUGCCUACUUUUCCGCGGGGAACAUUUCUCUGCAUCUGGCUGCACGUUGCAUACUUUUGGGCAGCAGACAGAA---------------- .(((((((..(((((..(((..(((..((((((.((..(......)..)).)))))).....)))...)))..)))))...)))))))................---------------- ( -33.10, z-score = -1.90, R) >consensus _______UUUACAUUUGUAUUUU__UCGAUGUUGCCUACUUUUCUGCGAGGCACAUUUUUCUGCAUCUGGCUGCACGAUGCAUACUUUUGGGCAGCAGACAGAAAAAUCG__________ .............................(((((((((.......((.(((..((......))..))).))(((.....)))......)))))))))....................... (-18.36 = -18.52 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:39 2011