| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,173,744 – 1,173,799 |
| Length | 55 |
| Max. P | 0.974506 |
| Location | 1,173,744 – 1,173,799 |
|---|---|
| Length | 55 |
| Sequences | 6 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 78.41 |
| Shannon entropy | 0.40182 |
| G+C content | 0.50384 |
| Mean single sequence MFE | -20.85 |
| Consensus MFE | -13.90 |
| Energy contribution | -13.87 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.974506 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1173744 55 - 22422827 ACAUUGUGCCACAUUGUGCCAGU----GC-UGGCACGGCAUCUUCAAUGCACAGUGAAUC .((((((((......(((((.((----(.-...)))))))).......)))))))).... ( -21.42, z-score = -2.27, R) >droSim1.chrX 928670 59 - 17042790 ACAUUGUGCCACAUUGUGCCAGUGCUGGC-UGGCACGGCAUCUUCAAUGCGCAGUGAAUC .((((((((......(((((.(((((...-.)))))))))).......)))))))).... ( -24.82, z-score = -2.23, R) >droSec1.super_10 1007192 59 - 3036183 ACAUUGUGCCACAUUGUGCCAGUGCUGGC-UGGCACGGCAUCUUCAAUGCGCAGUGAAUC .((((((((......(((((.(((((...-.)))))))))).......)))))))).... ( -24.82, z-score = -2.23, R) >droYak2.chrX 1088927 55 - 21770863 ACAUUGUGCCACAUUGUGCCAG----AGU-UGGCACGGCAUCUUGAAGGGGCGAUGAAAC .((((((.((...(((((((..----...-.)))))))(.....)..)).)))))).... ( -18.70, z-score = -1.83, R) >droEre2.scaffold_4644 1161079 55 - 2521924 ACAUUGUGCCACAUUGUGCCAG----AGU-UGGCACGUCAUCUUGAAGGCGCAGUGAAAC .(((((((((.....(((((..----...-.))))).((.....)).))))))))).... ( -23.90, z-score = -3.67, R) >droGri2.scaffold_14853 307788 56 + 10151454 -CAAUGUGGCACAUUGUGCCAAUUUUAACAUGGUACAUCAUCAUCCA---AUCAUGAACC -.....((((((...)))))).......((((((.............---)))))).... ( -11.42, z-score = -0.63, R) >consensus ACAUUGUGCCACAUUGUGCCAGU___AGC_UGGCACGGCAUCUUCAAUGCGCAGUGAAUC .((((((((.....(((((((.........)))))))...........)))))))).... (-13.90 = -13.87 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:38 2011