| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,166,389 – 1,166,478 |
| Length | 89 |
| Max. P | 0.914758 |
| Location | 1,166,389 – 1,166,478 |
|---|---|
| Length | 89 |
| Sequences | 3 |
| Columns | 89 |
| Reading direction | forward |
| Mean pairwise identity | 97.75 |
| Shannon entropy | 0.03095 |
| G+C content | 0.45318 |
| Mean single sequence MFE | -25.93 |
| Consensus MFE | -24.02 |
| Energy contribution | -24.13 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.914758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1166389 89 + 22422827 UCCAUGGGGGCUUACUUGUUGAUGCCAUUCCCACACCUCCGUCCCUCAUCAGUGCAUGUUUGCUAUAUAGCAUAUAUGUACAUACAUAU ...((((((((.....(((.((......))..))).....))))).)))..((((((((.((((....)))).))))))))........ ( -23.60, z-score = -1.62, R) >droSec1.super_10 999830 89 + 3036183 UCCAUGGGGGCUUACUUGUUGAUGCCAGCCCCACACCUCCGUCCCUCAUCUGUGCAUGUUUGCUAUAUAGCAUAUAUGUACAUACAUAU ...(((((((((..(........)..))))))..................(((((((((.((((....)))).)))))))))..))).. ( -27.10, z-score = -2.29, R) >droSim1.chrX 921291 89 + 17042790 UCCAUGGGGGCUUACUUGUUGAUGCCAGCCCCACACCUCCGUCCCUCAUCUGUGCAUGUUUGCUAUAUAGCAUAUAUGUACAUACAUAU ...(((((((((..(........)..))))))..................(((((((((.((((....)))).)))))))))..))).. ( -27.10, z-score = -2.29, R) >consensus UCCAUGGGGGCUUACUUGUUGAUGCCAGCCCCACACCUCCGUCCCUCAUCUGUGCAUGUUUGCUAUAUAGCAUAUAUGUACAUACAUAU ...(((((((((..(........)..))))))...................((((((((.((((....)))).))))))))...))).. (-24.02 = -24.13 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:37 2011