| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,164,958 – 1,165,055 |
| Length | 97 |
| Max. P | 0.955798 |
| Location | 1,164,958 – 1,165,055 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 80.36 |
| Shannon entropy | 0.33831 |
| G+C content | 0.43757 |
| Mean single sequence MFE | -23.66 |
| Consensus MFE | -17.94 |
| Energy contribution | -18.48 |
| Covariance contribution | 0.54 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.955798 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1164958 97 + 22422827 AAGCACUAUUAGAGUGACCGCAUAUGUAUUUCCUUUCGAGUGCCGUGCACACACCGGAAUAUUACAUACAUGUUGGUCACACAUUUCCUCAUAUGUA .............(((((((((((((((.((((....(.((((...)))).)...))))...))))))..)).)))))))((((........)))). ( -24.40, z-score = -2.01, R) >droEre2.scaffold_4644 1152292 89 + 2521924 AAACACUAUCAGUGUGACCGCAUAAGUAUUUCCUUUGGAGUGCCGCGCACACAGCUGCAUAUUACACAC-UGUUGGUCACACAUUUCCUC------- ...........(((((((((((...(((((((....))))))).((((.....)).))...........-)).)))))))))........------- ( -24.00, z-score = -2.17, R) >droYak2.chrX 1080146 76 + 21770863 ACGCACUAUUAGUGUGACCGCACAUGUAUUUCCUU-------------GCACAGCGGAGUAUUAUGUGC-UGUUGGCCACACAUUUCCCC------- ...........(((((.(((((((((((((((((.-------------....)).)))))).)))))))-....)).)))))........------- ( -21.50, z-score = -1.67, R) >droSec1.super_10 998423 93 + 3036183 AAGCACUAUUAGUGUGACCGUAUAUGUGUUUCCUUUCGAGUGCCGUGUACACACCGGAAUAUUAUAUAC-UGUUGGUCACACAUUUCCUCAUAU--- ...........(((((((((((((((...((((....(.((((...)))).)...))))...)))))))-....))))))))............--- ( -24.30, z-score = -2.01, R) >droSim1.chrX 919877 93 + 17042790 AAGCACUAUUAGAGUGACCGCAUAUGUGUUUCCUUUCGAGUGCCGUGCACACACCGGAAUAUUACAUAC-UGUUGGUCACACAUUUCCUCAUAU--- .............(((((((((((((((.((((....(.((((...)))).)...))))...)))))).-)).)))))))..............--- ( -24.10, z-score = -2.14, R) >consensus AAGCACUAUUAGUGUGACCGCAUAUGUAUUUCCUUUCGAGUGCCGUGCACACACCGGAAUAUUACAUAC_UGUUGGUCACACAUUUCCUCAUAU___ ...........(((((((((((((((((.((((......((((...)))).....))))...))))))..)).)))))))))............... (-17.94 = -18.48 + 0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:36 2011