| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,157,468 – 1,157,567 |
| Length | 99 |
| Max. P | 0.667635 |
| Location | 1,157,468 – 1,157,567 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 76.02 |
| Shannon entropy | 0.40775 |
| G+C content | 0.43527 |
| Mean single sequence MFE | -27.54 |
| Consensus MFE | -19.14 |
| Energy contribution | -19.98 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.667635 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1157468 99 + 22422827 CGCACUGUCCUU--AGCUGUGCAACAGUAUCUAAACGUAUAGUGAUAAGGA---GGCUUUAUCACUUAACUAGCACAGUUCUUGGAAAUAU----GCUGGCGAAGGAA- .(((...(((..--((((((((....((......))((..((((((((((.---..))))))))))..))..))))))))...)))....)----))...........- ( -28.80, z-score = -1.85, R) >droEre2.scaffold_4644 1144790 84 + 2521924 CUUACUGUCCUU--CGCAUUGCAAGCGUAUCUAAAGGAAAAGUGAUAAGGAUAAGGCUUUAUUACUCUACUAGCACAGUUUGUGGA----------------------- ............--....(..(((((....(((..(((...(((((((((......))))))))))))..)))....)))))..).----------------------- ( -17.40, z-score = 0.01, R) >droYak2.chrX 1072166 106 + 21770863 CCCGCUGUCCUUCAACCUUUGCAGCCGUAUCUAAAGGAGAAGUGAUAAGGG---GGCUUUAUCACUUUGCCAGCAAAGUUCUUGGAACUCCAAGAGCUGGGGAAGGAAA .......((((((..((.((((((......))...((..(((((((((((.---..)))))))))))..)).))))(((((((((....))))))))))).)))))).. ( -40.20, z-score = -2.41, R) >droSec1.super_10 991020 99 + 3036183 CGCACCGUCUUU--AGCUGUGCAACAGUAUCUUAAGGAAUACUGAUAAGGG---GGCUUUAUCACUUUACUAGCACAGUUCUUGGAAAUAU----GCUGGCGAAGGAA- .(((...(((..--((((((((..(((((((.....).)))))).((((((---(......)).)))))...))))))))...)))....)----))...........- ( -24.70, z-score = -0.68, R) >droSim1.chrX 911671 99 + 17042790 CGCACUGUCCUU--AGCUGUGCAACAGUAUCUUAAGGAAUACUGAUAAGGG---GGCUUUAUCACUUUACUAGCACAGUUCUUGGAAAUAU----GCUGGCGAAGGAA- .(((...(((..--((((((((..(((((((.....).)))))).((((((---(......)).)))))...))))))))...)))....)----))...........- ( -26.60, z-score = -1.11, R) >consensus CGCACUGUCCUU__AGCUGUGCAACAGUAUCUAAAGGAAUAGUGAUAAGGG___GGCUUUAUCACUUUACUAGCACAGUUCUUGGAAAUAU____GCUGGCGAAGGAA_ .......(((....((((((((.......((.....))..((((((((((......))))))))))......))))))))...)))....................... (-19.14 = -19.98 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:35 2011