| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,613,659 – 9,613,750 |
| Length | 91 |
| Max. P | 0.587818 |
| Location | 9,613,659 – 9,613,750 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 68.97 |
| Shannon entropy | 0.55219 |
| G+C content | 0.45193 |
| Mean single sequence MFE | -22.66 |
| Consensus MFE | -10.36 |
| Energy contribution | -11.30 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.587818 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9613659 91 + 23011544 ----------------UGAAAAUAUGGCAUUGGAAG-CGGCAUUCCAAUUAGCCACUUACUUUGAAUGAUUGGAUUCGCUACGCU----UUUUGCCAUACGCUCUCCCGCGA ----------------......(((((((..(((((-((((..((((((((..((.......))..))))))))...))..))))----))))))))))(((......))). ( -30.00, z-score = -3.65, R) >droSim1.chr2L 9387358 91 + 22036055 ----------------UGAAAAUAUGGCAUUGGAAG-CGGCAUUCCAAUUACCCACUCACUUUGAAUGAUUGGAUUCGGUACGCU----UUUCGCCAUACGCUCGCCCGCGA ----------------......((((((...(((((-((((..((((((((..((.......))..))))))))....)).))))----))).))))))(((......))). ( -27.30, z-score = -2.01, R) >droSec1.super_3 5060364 91 + 7220098 ----------------UGAAAAUAUGACAUUGGAAG-CGGCAUUCCAAUUACCCACUCACUUUGAAUGAUUGGAUUCGGUACGCU----UUUCGCCAUACGCUCGCCCGCGA ----------------......((((.(...(((((-((((..((((((((..((.......))..))))))))....)).))))----))).).))))(((......))). ( -20.20, z-score = -0.41, R) >droEre2.scaffold_4929 10220891 91 + 26641161 ----------------UGAAAAUAUGGCAUUGGAAG-CGGCAUUCCAAUUGCCCACUCACUCUGAAUGAUGGAAAGUGGUACGCC----AUUCGCCAUACGCUCGCCCGCGA ----------------.........((((((((((.-.....)))))).))))((.((.....)).))((((..(((((....))----)))..)))).(((......))). ( -26.80, z-score = -0.89, R) >droYak2.chr2L 12298179 91 + 22324452 ----------------GAAAAAUAUGGCAUUGGAAG-CGGCAUUCCAAUUACCCACUCGCACUGAAUGAUGGAAUUUGGUACGCU----UUUCGCCAUACGCUCGCCCGCGA ----------------......((((((...(((((-((.....((((....(((.(((.......))))))...))))..))))----))).))))))(((......))). ( -24.50, z-score = -0.80, R) >droAna3.scaffold_12943 1029656 77 + 5039921 ----------------UGAAAUAGUGGCAUUGGCAU-CUGAAUUCCAAUUUCCCACUCG--------------AUGUGCUACAUU----UUUUGCCAUACGCUCACAUACGA ----------------.......(((((..(((((.-..(((.......))).(((...--------------..))).......----...)))))...)).)))...... ( -14.10, z-score = -0.54, R) >dp4.chr4_group3 11131799 112 - 11692001 UAGAAAAAUUAGUGCAAAUGGAAAUGAAAUUGGAAUUCCUCUUUCUUUUUAUCUUUUUCUACUUCUUCGUUUCAUUUCAUUCUCCACGCUUUUGCCAUACGUUCGCUUACGA ...........(.(((((((((((((((((.(((((................................))))))))))))).))))....))))))...(((......))). ( -15.75, z-score = -0.66, R) >consensus ________________UGAAAAUAUGGCAUUGGAAG_CGGCAUUCCAAUUACCCACUCACUCUGAAUGAUUGGAUUUGGUACGCU____UUUCGCCAUACGCUCGCCCGCGA ......................(((((((((((((.......)))))))((((........................))))............))))))(((......))). (-10.36 = -11.30 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:33 2011