| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,156,541 – 1,156,605 |
| Length | 64 |
| Max. P | 0.874920 |
| Location | 1,156,541 – 1,156,605 |
|---|---|
| Length | 64 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 60.10 |
| Shannon entropy | 0.72747 |
| G+C content | 0.53507 |
| Mean single sequence MFE | -18.70 |
| Consensus MFE | -8.21 |
| Energy contribution | -8.38 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.874920 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1156541 64 + 22422827 AAACACAGUGCGCAGUGGGCGUCCGAGAUGUGGUAAGACAUCUCGCCCGCUGAACUAUGCUGCC ...((.(((...((((((((....(((((((......))))))))))))))).))).))..... ( -26.50, z-score = -2.92, R) >droYak2.chrX 1071202 60 + 21770863 ACUCACACUGCGUAGUGGGCGUUCGAGCCCUGGAAGGGCAUCUCGCCCGUUGAAUCUGGC---- .....((.....(((((((((...((((((.....)))).)).)))))))))....))..---- ( -19.60, z-score = -0.11, R) >droSec1.super_10 990086 64 + 3036183 AAACACAGUGCGCAAUGGGCGUCCGAGACCUGGUAAGUCAUCUCGCCCGCUGAAUUAUGCUGCC .....((((...((.((((((...(((((.......))).)).)))))).))......)))).. ( -16.70, z-score = -0.04, R) >droSim1.chrX 910732 64 + 17042790 AAACACAGUGCGCAGUGGGCGUCCGAGACCUGGUAAGUCAUCUCGCCCGCUGAAUUAUGCUGCC .....((((...(((((((((...(((((.......))).)).)))))))))......)))).. ( -23.00, z-score = -1.90, R) >dp4.chrXL_group1a 4232539 64 - 9151740 AGAUACCAUAUCCAAUGAAUGUUCGGAGAUUGCCCAGAUCCCAUACGAGUAUGCAGAUGGUUCU (((.(((((.....(((..(((..((.((((.....))))))..)))..)))....)))))))) ( -13.20, z-score = -0.63, R) >droPer1.super_11 1339033 64 - 2846995 AGAUACCAUAUCCAAUGAAUGUUCGGAGAUUGCCCAGAUCCCAUACGAGUAUGCAGAUGGUUCU (((.(((((.....(((..(((..((.((((.....))))))..)))..)))....)))))))) ( -13.20, z-score = -0.63, R) >consensus AAACACAGUGCGCAAUGGGCGUCCGAGACCUGGUAAGACAUCUCGCCCGCUGAAUUAUGCUGCC ............(((((((((...((...((....))...)).)))))))))............ ( -8.21 = -8.38 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:34 2011