| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,155,263 – 1,155,400 |
| Length | 137 |
| Max. P | 0.620163 |
| Location | 1,155,263 – 1,155,400 |
|---|---|
| Length | 137 |
| Sequences | 4 |
| Columns | 142 |
| Reading direction | forward |
| Mean pairwise identity | 71.36 |
| Shannon entropy | 0.44511 |
| G+C content | 0.47659 |
| Mean single sequence MFE | -39.55 |
| Consensus MFE | -18.44 |
| Energy contribution | -19.62 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620163 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1155263 137 + 22422827 CAAGUUUUAGGAUCUAGCAUCUAACCGAUCUAGAUUCGAACUAA---CUGAGCCAG--CAGCAGAGAACGCUGUUAGCAUGCAGUAAUUACUGAGGCUAAUACCUCGUUCUCGACCGGGUGCGAUCCACCAGGUUGUCGAAC ..(((((..((((((((.(((.....)))))))))))))))).(---(((.((.((--((((.......)))))).))...)))).......((((......))))((((.(((((.((((.....)))).)))))..)))) ( -47.10, z-score = -3.50, R) >droEre2.scaffold_4644 1142473 142 + 2521924 UAAAACUGGGGACCUAGCAUCUAGCUGAUUCUGAUAUUAAUCGAGAUUUGAGCAAAGCCAGCAGAGCAGGCUUCUAACAUGCAGUAAUUGCUUGGGCUAAUACCUCAUUCUCGGCUGGGCGCGAUCCAUCAGGUUGGGGAAU .....(((((((....((..((((((((((........))))((((..((((...((((....(((((.(((.(......).)))...))))).)))).....)))).))))))))))..))..))).)))).......... ( -41.80, z-score = -0.19, R) >droSec1.super_10 988766 116 + 3036183 CAAAUUUUGGGAUCUAGUAUCUC-UAGAUCGAGAUUUGAGCCAA---CUGAGCCAG--CAGCAG--------------------UAAUUGAUGCGACUAAUACCUCAUUCUCGACCGGGUGCGAUCCACCAGGUUCAGGAAC ((((((((..(((((((.....)-))))))))))))))......---(((((((((--..(((.--------------------.......)))..))...................((((.....)))).))))))).... ( -33.80, z-score = -1.63, R) >droSim1.chrX 909401 117 + 17042790 CAAAUUUUGGGAUCUAGCAUCUAGUCGAUCGAGAUUUGAGCCAA---CUGAGCCAG--CAGCAG--------------------UAAUUGAUGCGACUAAUACCUCAUUCUCGACCGGGUGAGAUCCACCAGGUUGAGGAAC ((((((((((...((((...))))....))))))))))......---.((((..((--..(((.--------------------.......)))..)).....))))(((((((((.((((.....)))).))))))))).. ( -35.50, z-score = -1.90, R) >consensus CAAAUUUUGGGAUCUAGCAUCUAGCCGAUCGAGAUUUGAACCAA___CUGAGCCAG__CAGCAG____________________UAAUUGAUGCGACUAAUACCUCAUUCUCGACCGGGUGCGAUCCACCAGGUUGAGGAAC ........(((...((((((((((.....))))))................((.......)).................................))))...)))..(((((((((.((((.....)))).))))))))).. (-18.44 = -19.62 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:34 2011