Locus 12606

Sequence ID dm3.chrX
Location 1,142,848 – 1,142,982
Length 134
Max. P 0.756854
window17340

overview

Window 0

Location 1,142,848 – 1,142,982
Length 134
Sequences 3
Columns 134
Reading direction forward
Mean pairwise identity 77.33
Shannon entropy 0.29280
G+C content 0.37860
Mean single sequence MFE -26.80
Consensus MFE -22.80
Energy contribution -21.03
Covariance contribution -1.76
Combinations/Pair 1.24
Mean z-score -1.27
Structure conservation index 0.85
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.60
SVM RNA-class probability 0.756854
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 1142848 134 + 22422827
UUAUCCUUAGUGAUUGCGUAACUAGCUAGGCUACGUUGGUAGGUUUGUAAACUACAGACGAGUAUGUUUGUAUCAACUACUUAAUUCUGUGGAUUAUUGAAAAGCAUAAACCAGAUUUCAGAUCGCAAAAGUAU
.........((((((.....((((((........)))))).(((((((...(((((((.(((((.(((......))))))))...)))))))....((....)).)))))))........))))))........ ( -29.30, z-score =  -0.47, R)
>droSim1.chrX 896568 107 + 17042790
UUAUCCUCAGUGAUUGCACAACUAGCUGAGCUACGUCGGUAGGUUUUUACACUACAUACGAGUAUGUUUGUAUCAACUACUCAAUCCUGCGCAUUACUGAAAAGCAU---------------------------
......((((((((.((.((......((((((((....))))(((..((((..(((((....))))).))))..)))..))))....)).)))))))))).......--------------------------- ( -25.90, z-score =  -1.57, R)
>droSec1.super_10 976536 107 + 3036183
UUAUCCUCAGUGAUUGCACAACUAGCUGAGCUACGUCGGUAGGUUUUUACACUACAUACGAGUAUGUUUAUAUCAACUACUCAAUCCUGCGUAUUACUGAAAAGCAU---------------------------
......((((((((((((.((((.(((((......))))).))))..............(((((.(((......)))))))).....)))).)))))))).......--------------------------- ( -25.20, z-score =  -1.78, R)
>consensus
UUAUCCUCAGUGAUUGCACAACUAGCUGAGCUACGUCGGUAGGUUUUUACACUACAUACGAGUAUGUUUGUAUCAACUACUCAAUCCUGCGCAUUACUGAAAAGCAU___________________________
......((((((((((((.((((.(((((......))))).))))..............(((((.(((......)))))))).....)))).)))))))).................................. (-22.80 = -21.03 +  -1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:31 2011