| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,130,456 – 1,130,520 |
| Length | 64 |
| Max. P | 0.891641 |
| Location | 1,130,456 – 1,130,520 |
|---|---|
| Length | 64 |
| Sequences | 6 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 70.73 |
| Shannon entropy | 0.54400 |
| G+C content | 0.46698 |
| Mean single sequence MFE | -11.87 |
| Consensus MFE | -6.03 |
| Energy contribution | -6.53 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.891641 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1130456 64 + 22422827 GAAAACACACACUGCACUCACACACACACACGAAGAACGAGUGCUUCGAAGGUUUUCG-UUUUCG ((((((.......((((((...................)))))).......)))))).-...... ( -14.45, z-score = -1.98, R) >droSim1.chrX_random 918530 65 + 5698898 GAAAACACACACUGCACUCACACUCACACACGAAGAACGAGUGCUUCGAAGGUUUUCGGUUUUCG ((((((.......((((((....((......)).....))))))..((((....)))))))))). ( -15.70, z-score = -2.05, R) >droSec1.super_10 964399 65 + 3036183 GAAAACACACACUGCACUCACACUCACACACGAAUAACGAGUGCUUCGUAGGUUUUCGGUUUUCG ((((((..((...((((((....((......)).....))))))...))..))))))........ ( -16.00, z-score = -2.98, R) >droYak2.chrX 1045232 54 + 21770863 --GAAAACACACUACACUCACA--CACACACGGAGAACGAGUGUUUCGACGCUUUUUG------- --(((...(((((...(((.(.--.......))))....))))))))...........------- ( -7.00, z-score = -0.50, R) >droEre2.scaffold_4644 1115786 54 + 2521924 --GAAAACACACUACACUCACA--CACACACGAAGAACGGGUGUUUCGAAGGUUUUCG------- --((((((.....((((((...--..............)))))).......)))))).------- ( -10.93, z-score = -1.68, R) >anoGam1.chr2R 29675556 64 + 62725911 GGAACUGCCCAAUGCACCCACUCACACACACAAACACAAGCUAUCUCUGUGGAUCCUUUUUUUG- (((..(((.....))).((((...........................)))).)))........- ( -7.13, z-score = -0.08, R) >consensus GAAAACACACACUGCACUCACAC_CACACACGAAGAACGAGUGCUUCGAAGGUUUUCG_UUUUC_ ((((((.......((((((...................)))))).......))))))........ ( -6.03 = -6.53 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:30 2011