| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,129,457 – 1,129,573 |
| Length | 116 |
| Max. P | 0.688688 |
| Location | 1,129,457 – 1,129,573 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 81.23 |
| Shannon entropy | 0.31766 |
| G+C content | 0.41592 |
| Mean single sequence MFE | -29.30 |
| Consensus MFE | -17.32 |
| Energy contribution | -19.60 |
| Covariance contribution | 2.28 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.688688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1129457 116 + 22422827 CGAACAAGGUGAUGGCGACUUCUGGAUACCCUGCACAUAAUGUAGAAUGUAUUUAGAAGAAACAUGUCCACGGACAACUAACGGCUAUCAUGCGAUGCAAUUACUUUGCUCUGGAA .((.((((((((((((..(((((((((((.(((((.....)))))...))))))))))).....((((....)))).......)))))).(((...)))...)))))).))..... ( -36.30, z-score = -4.04, R) >droSim1.chrX_random 917544 116 + 5698898 CAAACAAGGCGAUGGCGACUUCUGGAUACCCUGCACAUAAUGUAGAAUGUAUUUAGAAGAAACAUGUCCACGGGCAACUAACGGCUAUCAUGCGAUGCAAUUAUUUUGCUAUGGAA ....((.(((((((((..(((((((((((.(((((.....)))))...))))))))))).....((((....)))).......)))))).(((...)))........))).))... ( -34.30, z-score = -3.07, R) >droSec1.super_10 963534 116 + 3036183 CAAACAAUGCGAUGGCGACUUCUGGAUACCCUGCACAUAAUGUAGAAUGUAUUUAGGAGAAACAUGUCCACGGGCAACUAACGGCUAUCAUGCGAUGCAAUUAUUUUGCUAUGGAA .......(((((((((..(((((((((((.(((((.....)))))...))))))))))).....((((....)))).......))))))..)))..((((.....))))....... ( -32.30, z-score = -2.33, R) >droYak2.chrX 1044194 107 + 21770863 CGGACAAGUUGAUGAUGGCCUCUAGAUACCCUGCACA-AAUA--------AUUUAGAAGAAACAUAUGUAAGGGCAACCAGCGGAUAUCAUGAGAUGUAAUUACUUUGCUCUGGAA ((((((((.((((.(((..(((..((((..((((...-....--------...........((....))..((....)).)))).))))..))).))).)))).)))).))))... ( -21.90, z-score = -0.24, R) >droEre2.scaffold_4644 1114692 107 + 2521924 CAGACAAGAUGAUGGCGAUUUCUGGAUACCCUGCACA-AAUA--------CUUUAAAAUAACCAUAUGAAAGGGCAACCAACGGCUAUUAUGAGGUGUAAUCACAUUGCUCUGGAA (((((((..((((.(((......((....)))))...-.(((--------(((((.((((.((........((....))...)).)))).)))))))).))))..))).))))... ( -21.70, z-score = -0.46, R) >consensus CAAACAAGGUGAUGGCGACUUCUGGAUACCCUGCACAUAAUGUAGAAUGUAUUUAGAAGAAACAUGUCCACGGGCAACUAACGGCUAUCAUGCGAUGCAAUUACUUUGCUCUGGAA ..........((((((..(((((((((((.(((((.....)))))...)))))))))))............((....))....)))))).......((((.....))))....... (-17.32 = -19.60 + 2.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:29 2011