| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,126,371 – 1,126,493 |
| Length | 122 |
| Max. P | 0.543993 |
| Location | 1,126,371 – 1,126,493 |
|---|---|
| Length | 122 |
| Sequences | 5 |
| Columns | 130 |
| Reading direction | forward |
| Mean pairwise identity | 68.57 |
| Shannon entropy | 0.54902 |
| G+C content | 0.56200 |
| Mean single sequence MFE | -36.32 |
| Consensus MFE | -21.36 |
| Energy contribution | -21.72 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.70 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.543993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1126371 122 + 22422827 --------AAGAGGGUAGUCGAACGGAGUGGCCCGGGACAGGAGCUCGCAAUUUGCAUAUGUUGAUUGCGAAGCCGGCUAAAAGGGCGUCGUCCUGCCUUGCCCCGCCCCCCCGUUAAAAAAUAGUACGU --------.............(((((.(.((..((((.((((.((((((((((.((....)).))))))).))))(((....(((((...))))))))))).))))..)))))))).............. ( -39.10, z-score = 0.22, R) >droSec1.super_10 960476 121 + 3036183 --------GACUGGGUAGUCGAACGGAGUAGCCCGGGACAGGAGCUCGCAAUUUGCAUAUGUUGAUUGCGAAGCCGGCUAAAAGGGCGUCGUCCUCCCCUGCCCCGGCCCCC-GUUGAAAAAUAGUACGU --------.((((.....((.(((((.(..(((.(((.((((.((((((((((.((....)).))))))).)))........(((((...)))))..))))))).))).)))-)))))....)))).... ( -44.00, z-score = -1.22, R) >droYak2.chrX 1041141 98 + 21770863 ------------------------GGAGUAACCCGGGACAGGAGCUCGCCAUUUGCAUAUGCUGAUUGCGAAGCCGGCUAAAAGGGCGUCGUCCUGCCCCGC------CCCCCGUGGAAAGA--GUAUAU ------------------------.......((((((...((...((((.(((.((....)).))).))))..))(((.....(((((......))))).))------).)))).)).....--...... ( -31.60, z-score = -0.06, R) >droEre2.scaffold_4644 1111671 102 + 2521924 -----------------------AGGAGUAACCCGGGACAAGAGCUCGCAAUUUGCAUAUGCUGAUUGCGAAGCCGGCUAAAAGGGCGUCGUCCUGCCCCGCCUC---CCCCCGUGGAAAGA--GUACAU -----------------------........((((((....(.((((((((((.((....)).))))))).))))(((.....(((((......))))).)))..---..)))).)).....--...... ( -35.90, z-score = -1.55, R) >droAna3.scaffold_12929 2315566 115 - 3277472 GACGCGACUGUUGGUCCUUCUGCUGGAAAAUCCUUAAAAAGGAACUUGAAAUUUGCAUAUGUUGAUUGGGAAACCGGUUAAAAGGGCGUCGUCCUGUCACGCCCCCACCUCCCCU--------------- ...((((...(..((((((.....((.....)).....)))))..)..)...)))).....((((((((....))))))))..((((((.(......)))))))...........--------------- ( -31.00, z-score = -0.86, R) >consensus ____________GG____UC___CGGAGUAACCCGGGACAGGAGCUCGCAAUUUGCAUAUGUUGAUUGCGAAGCCGGCUAAAAGGGCGUCGUCCUGCCCCGCCCC__CCCCCCGUGGAAAAA__GUACAU ........................((......))(((...((...((((((((.((....)).))))))))..))(((....(((((...))))).....)))......))).................. (-21.36 = -21.72 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:28 2011