| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,124,047 – 1,124,151 |
| Length | 104 |
| Max. P | 0.549033 |
| Location | 1,124,047 – 1,124,151 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 84.23 |
| Shannon entropy | 0.28543 |
| G+C content | 0.36703 |
| Mean single sequence MFE | -23.82 |
| Consensus MFE | -14.79 |
| Energy contribution | -14.63 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1124047 104 + 22422827 UGAACUUUGUUUACUCUAAGGCAGAGUAAAAUUCGUUUAAUGCAGCCAACUAAAUAAAUGUGCAUAGAAUGGCGUCACUUUCUUAUGUCAUAUUGCAAAGAAAG (((((....((((((((.....))))))))....))))).....((((.(((............)))..))))....(((((((.(((......)))))))))) ( -21.00, z-score = -0.92, R) >droSim1.chrX_random 911124 104 + 5698898 UGAACUUUGUUUACUCUAAGGCAGAGUGAAAUCCGUUUAAUGCAGCCAACAAAAUAAGUGUCCAUAGAAUGGCGUCACUUUCUUAUGUCAUCUUGCAAAGAAAG (((((....((((((((.....))))))))....))))).(((((...(((....(((((.((((...))))...))))).....)))....)))))....... ( -21.50, z-score = -0.91, R) >droSec1.super_10 958162 104 + 3036183 UGAACUUUGUUUACUCUAAGGCAGAGUAAAAUCCGUUUAAUGCAGCCAACUAAAUAAGUGUGCAUAGAAUGGCGUCACUUUCUUAUGUCAUCUUGCAAAGAAAG ((((((((((((......))))))))).....((((((.(((((....(((.....))).))))).))))))..)))(((((((.(((......)))))))))) ( -25.40, z-score = -2.09, R) >droYak2.chrX 1038870 91 + 21770863 UGAACUUUGUUUACUCUAACGCAGAGUAAAAUCCGUUUCAUGCAGCAAACUAAAUAAAUGUGCAUGAAAUGGCGUCAUCUGCGAAAGAAAG------------- ..............(((..((((((.......((((((((((((.((...........)))))))))))))).....))))))..)))...------------- ( -27.20, z-score = -4.08, R) >droEre2.scaffold_4644 1109322 104 + 2521924 UGAACUUUGUUUACUCUAACGCAGAGUAAAAUCCGUUUAAUGCAGCAAACUAAACAAAUGUGCACGAAAUGGCGUCACUUUCUGAUGUCAUCAGGAAAAGCAAG (((((....((((((((.....))))))))....))))).(((................(((.(((......))))))((((((((...))))))))..))).. ( -24.00, z-score = -1.57, R) >consensus UGAACUUUGUUUACUCUAAGGCAGAGUAAAAUCCGUUUAAUGCAGCCAACUAAAUAAAUGUGCAUAGAAUGGCGUCACUUUCUUAUGUCAUCUUGCAAAGAAAG (((......((((((((.....))))))))..((((((.(((((................))))).))))))..)))........................... (-14.79 = -14.63 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:24 2011