| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,119,021 – 1,119,125 |
| Length | 104 |
| Max. P | 0.600102 |
| Location | 1,119,021 – 1,119,125 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 96.79 |
| Shannon entropy | 0.04415 |
| G+C content | 0.61859 |
| Mean single sequence MFE | -19.20 |
| Consensus MFE | -18.74 |
| Energy contribution | -18.63 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600102 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1119021 104 + 22422827 ACUUCCCCUUGUCCCAUGUCCCAUAGUCGCCUAGUCCCCUAGUCAGCCCCAUUACCCAUCCAGCGCGCACCGUGCUGUCCCACGUGGCCACGUAACUGUCAGCA .............((((((......((.(.((((....)))).).)).............(((((((...)))))))....))))))................. ( -18.40, z-score = -0.85, R) >droSim1.chrX_random 902355 104 + 5698898 ACUUCCCCUACUCCCAUGUCCCACAGUCGCCUUGUCCCCUAGUCAGCCCCAUUACCCACCCAGCGCGCACCGUGCUGUCCCACGUGGCCACGUAACUGUCAGCA ................(((...(((((..(.(((.(.....).))).........((((.(((((((...)))))))......))))....)..)))))..))) ( -18.00, z-score = -0.52, R) >droSec1.super_10 953199 104 + 3036183 ACUUCCCCUAGUCCCAUGUCCCACAGUCGCCUAGUCCCCUAGUCAGCCCCAUUACCCACCCAGCGCGCACCGUGCUGUCCCACGUGGCCACGUAACUGUCAGCA ........((((..(.((..((((.((.(.((((....)))).).)).............(((((((...)))))))......)))).)).)..))))...... ( -21.20, z-score = -1.67, R) >consensus ACUUCCCCUAGUCCCAUGUCCCACAGUCGCCUAGUCCCCUAGUCAGCCCCAUUACCCACCCAGCGCGCACCGUGCUGUCCCACGUGGCCACGUAACUGUCAGCA ................(((...(((((..(((((....)))).............((((.(((((((...)))))))......))))....)..)))))..))) (-18.74 = -18.63 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:23 2011