| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,103,720 – 1,103,789 |
| Length | 69 |
| Max. P | 0.978442 |
| Location | 1,103,720 – 1,103,789 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 78 |
| Reading direction | reverse |
| Mean pairwise identity | 69.67 |
| Shannon entropy | 0.55323 |
| G+C content | 0.42450 |
| Mean single sequence MFE | -12.03 |
| Consensus MFE | -7.35 |
| Energy contribution | -7.97 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.978442 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1103720 69 - 22422827 --UUUCUUCAUUCCCUCACUCUUAGUUUCGUUUGCGCACAGUGGGUUAAAUUCACGUGUGCAUA-AAUAUUC------ --..............................(((((((.((((((...)))))))))))))..-.......------ ( -14.10, z-score = -3.08, R) >droAna3.scaffold_12929 930319 69 - 3277472 GUUUUGCAUACUCUCUCUCUCUCUCUUUCUUACGCACACACCUGGUGGGGCCAGCCAGCACACCUUUCC--------- ...........................................((((.((....))....)))).....--------- ( -7.80, z-score = 0.96, R) >droEre2.scaffold_4644 1088879 66 - 2521924 -----UUUUAUUCACUUACUCUCAGUUUCGUUUGCGCACAGUGGGUCAAAUACACCUGCGCAUA-AAUAUUC------ -----...........................((((((..(((.........))).))))))..-.......------ ( -11.00, z-score = -1.64, R) >droYak2.chrX 1018523 70 - 21770863 -UUUUAUUCAUUCACUCACUCUCAGUUUCGUUUGCGCACAGUGGGUCAAAUACACCUGUGCAUA-CAUAUUC------ -............................((.((((((..(((.........))).)))))).)-)......------ ( -11.50, z-score = -1.86, R) >droSec1.super_10 937404 69 - 3036183 --UUUCUUCAUUCCCUCACUCUUAGUUUCGUUUGCGCACAGUGGGUUAAAUUCACCUGUGCAUA-AAUAAUC------ --...........................(((((.(((((((((((...))))).)))))).))-)))....------ ( -13.20, z-score = -2.89, R) >droSim1.chrX 882893 76 - 17042790 --UUUCUUCAUUCCCUCACUCUUAGUUUCGUUUGCGCACAGUGGGCUAAAUUCACCUGUGCAUAUGGUGAAUUCACAC --.............(((((....((.......))((((((((((.....)))).))))))....)))))........ ( -14.60, z-score = -1.08, R) >consensus __UUUCUUCAUUCCCUCACUCUCAGUUUCGUUUGCGCACAGUGGGUUAAAUUCACCUGUGCAUA_AAUAUUC______ ...................................(((((((((((...)))))).)))))................. ( -7.35 = -7.97 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:21 2011