| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,102,098 – 1,102,212 |
| Length | 114 |
| Max. P | 0.955625 |
| Location | 1,102,098 – 1,102,212 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 69.46 |
| Shannon entropy | 0.50053 |
| G+C content | 0.37245 |
| Mean single sequence MFE | -31.50 |
| Consensus MFE | -13.97 |
| Energy contribution | -17.72 |
| Covariance contribution | 3.75 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.955625 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1102098 114 - 22422827 AACAAGCUGAUUCCAAUUUCGGA----AUUGGUGUACAUACAAAUAUUACCAUGAAAAAAUUGAGAGAAUCCUCCUAUUAGAGGACUCAUUUGAAUGU--AAUGGUAAUGGUAGUGAACA .....((..(((((......)))----))..))((.(((.....(((((((((......(((.(((((.(((((......))))).)).))).)))..--.)))))))))...))).)). ( -32.00, z-score = -3.55, R) >droEre2.scaffold_4644 1087128 108 - 2521924 AUCGGACCAAUUGCAAUUUUCGAG---UUUGGGAUAU-UUCACACACU-------AAAAGUCCCGUGAAUCCGCUCUUCAUAGAACUCAUUCGUUUGGUGUAUGGUUUUAGUGCGAAAA- .((..(((((.((.(((....(((---((((((((.(-((........-------))).)))))(((((.......))))).))))))))))).)))))((((.......))))))...- ( -20.30, z-score = 0.72, R) >droSec1.super_10 935692 120 - 3036183 AACAAGCUAAUUCCAAUUUCGGAAUGCAUUGGUGUGCAUACAUAUAUUGCCAUCGAAAAAUCGAGUGAAUCCUGAUUUUAGAGGACUCAUUCGAAUGUUGCAUGAUGGUAAUAGGGAACA ..........((((.......(.((((((....)))))).)...(((((((((((.((..((((((((.((((........)))).))))))))...))...)))))))))))))))... ( -37.80, z-score = -3.63, R) >droSim1.chrX 881180 120 - 17042790 AACAAGCUAAUUCCAAUUUCGGAAUGCAUUGGUGUGCAUACAUAUAUUGCCAUCGGAAAAUCGAGUGAAGAUUCCUUUUAGAGGACUCAUUCGAAUGUUGCAUGAUGGUAAUAGGGAACA ..........((((.......(.((((((....)))))).)...(((((((((((..((.((((((((....(((((...))))).))))))))...))...)))))))))))))))... ( -35.90, z-score = -2.93, R) >consensus AACAAGCUAAUUCCAAUUUCGGAA___AUUGGUGUACAUACAUAUAUUGCCAUCGAAAAAUCGAGUGAAUCCUCCUUUUAGAGGACUCAUUCGAAUGUUGCAUGAUGGUAAUAGGGAACA .....(((((((((......)))....))))))...........(((((((((((.....((((((((.(((((......))))).))))))))........)))))))))))....... (-13.97 = -17.72 + 3.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:20 2011