| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,096,909 – 1,097,007 |
| Length | 98 |
| Max. P | 0.679018 |
| Location | 1,096,909 – 1,097,007 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 67.35 |
| Shannon entropy | 0.61593 |
| G+C content | 0.49825 |
| Mean single sequence MFE | -18.12 |
| Consensus MFE | -9.86 |
| Energy contribution | -10.20 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.72 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.679018 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1096909 98 + 22422827 AAGGACUUGGAAGCCAGUUUGGCUCUGAGGCCACCGCCCAAAUAGUAAACCCCAUCCCUCGA---UUAAUCAAUCGAAUAAGCCGCAAAACUCCACCACCA---- ..((.((((((((((.....)))).((.(((....)))))..............))).((((---((....))))))..))))).................---- ( -19.30, z-score = -0.79, R) >droSim1.chrX 876033 98 + 17042790 AAGGACUUGGAAGCCAGUUUGGCCCUGAGGCCACCGCCCAAAUAGUAAACCCCAUCCCUCGA---UUAAUCAAUCGAAUAAGCCGCAAAACUCCACCACCA---- ..((.((((((.(((.....)))..((.(((....)))))..............))).((((---((....))))))..))))).................---- ( -18.30, z-score = -0.59, R) >droSec1.super_10 928507 98 + 3036183 AAGGACUUGGAAGCCAGUUUGGCUCUGAGGCCACCGCCCAAAUAGUAAGCCCCAUCCCUCGA---UUAAUCAAUCGAAUAAGCCGCAAAACUCCACCACCA---- ..((...((((((((.....)))).((.(((....((...........))........((((---((....))))))....))).))....))))...)).---- ( -19.90, z-score = -0.61, R) >droEre2.scaffold_4644 1081788 98 + 2521924 AAGGACUUGGAAGCCAGUUUGGCUUUGAGGCCACCGCCCAAAUAGUAAUCCCCUUCCCCCUCCCCUCGAUUAAUCGAGUAAGCCGCAAAACUCCACCA------- ..((.((((((((((.....)))((((.(((....)))))))...........)))).......(((((....))))).)))))..............------- ( -21.60, z-score = -1.07, R) >droAna3.scaffold_12929 921288 104 + 3277472 AAGGAUCUCGAAGCCAGCUUGGCCCUGAGACCGCCACCCAAAUAGUUGACCCUCAACCCUUAACCCUUAACCGCCGCCUG-GUCAUAACCUUUAACCCCCAAUAG ..((.(((((..(((.....)))..)))))))............((((.....))))............((((.....))-))...................... ( -17.10, z-score = -0.94, R) >droWil1.scaffold_180777 1403636 75 + 4753960 AAGGAUAUGGAAGCCAAUUUGGCUCUACGACCGCCACCCAAA-AAUUAGUCUCAUUCAUAGAAAUUUUCCUUGUCA----------------------------- ...((((.(((((((.....)))((((.((.....((.....-.....)).....)).))))....)))).)))).----------------------------- ( -12.50, z-score = -0.35, R) >consensus AAGGACUUGGAAGCCAGUUUGGCUCUGAGGCCACCGCCCAAAUAGUAAACCCCAUCCCUCGA___UUAAUCAAUCGAAUAAGCCGCAAAACUCCACCACCA____ ..((.((((((.(((.....))))))))).))......................................................................... ( -9.86 = -10.20 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:16 2011