| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,093,165 – 1,093,269 |
| Length | 104 |
| Max. P | 0.760831 |
| Location | 1,093,165 – 1,093,269 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 87.37 |
| Shannon entropy | 0.24358 |
| G+C content | 0.43487 |
| Mean single sequence MFE | -30.12 |
| Consensus MFE | -21.19 |
| Energy contribution | -22.50 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.760831 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1093165 104 + 22422827 ---GGAUUGUUUGGCUUAGCUUAUGGCUUAAUUGGCCAUCAAAGUGGCAGCUUAAACAGAGGCCGAAACUGAAGCCAAGAAACUAAAAACUAUAAACCAGUUGUCCC ---((((..((((((((.((((((((((.....))))))..))))(((..((.....))..))).......))))))))........((((.......)))))))). ( -28.10, z-score = -1.42, R) >droAna3.scaffold_12929 916440 94 + 3277472 GUUUGUUUGUUUGGCCUGGCUGUUGGCUUAAUUGGCCAUCAAAGUGGC---UAAAAUCGAAACUGAGA-----GCCACUAAAGCCAAG----UAAACCAGUUGUCU- ....(((((((((((.....((.(((((.....))))).)).((((((---(....(((....))).)-----))))))...))))))----))))).........- ( -30.70, z-score = -2.54, R) >droEre2.scaffold_4644 1078310 104 + 2521924 ---GGAUUGUUUGGCUUAGCUUAUGGCUUAAUUGGCCAUCAAAGUGGCAGCUGAAACAGAGGCCGAAACUGAAGCCAAGAAACUAAAAACUAUAAACCAGUUGUCCC ---((((..((((((((.((((((((((.....))))))..))))(((..(((...)))..))).......))))))))........((((.......)))))))). ( -30.00, z-score = -1.97, R) >droYak2.chrX 1007908 104 + 21770863 ---GGAUUGUUUGGCUUAGCUUAUGGCUUAAUUGGCCAUCAAAGUGGCAGCUGAAACAGAGGCCGAAACCGAAGCCAAGAAACUAAAAACUAUAAACCAGUUGUCCC ---((((..((((((((.((((((((((.....))))))..))))(((..(((...)))..))).......))))))))........((((.......)))))))). ( -30.00, z-score = -2.03, R) >droSec1.super_10 924699 104 + 3036183 ---GGAUUGUUUGGCUUAGCUUAUGGCUUAAUUGGCCAUCAAAGUGGCAGCUGAAACAGAGGCCGAAACUGAAGCCAAGAAACUGAAAACUAUAAACCAGUUGUCCC ---((((..((((((((.((((((((((.....))))))..))))(((..(((...)))..))).......)))))))).(((((............))))))))). ( -32.50, z-score = -2.60, R) >droSim1.chrX 872235 104 + 17042790 ---GUAUUGUUUGGCUUAGCUUAUGGCUUAAUUGGCCAUCAAAGUGGCAGCUGAAACAGAGGCCGAAACUGAAGCCAAGAAACUGAAAACUAUAAACCAGUUGUCCC ---......((((((((.((((((((((.....))))))..))))(((..(((...)))..))).......)))))))).(((((............)))))..... ( -29.40, z-score = -1.82, R) >consensus ___GGAUUGUUUGGCUUAGCUUAUGGCUUAAUUGGCCAUCAAAGUGGCAGCUGAAACAGAGGCCGAAACUGAAGCCAAGAAACUAAAAACUAUAAACCAGUUGUCCC .........((((((((.((((((((((.....))))))..))))(((..(((...)))..))).......))))))))............................ (-21.19 = -22.50 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:15 2011