| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,083,483 – 1,083,596 |
| Length | 113 |
| Max. P | 0.598178 |
| Location | 1,083,483 – 1,083,596 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 72.03 |
| Shannon entropy | 0.44940 |
| G+C content | 0.48401 |
| Mean single sequence MFE | -30.30 |
| Consensus MFE | -18.40 |
| Energy contribution | -20.53 |
| Covariance contribution | 2.13 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.598178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1083483 113 - 22422827 UACGAUCGAGCAGACGAUUUAUUUCGGCUCGUUCAACUGGAGCGAGAUGUGACCCCACGAGAAGGUCACUGGCUUUGGCUCAAUACAGUUCUCUAUAAUGCGACAGAAACAUC ...((.(((((...(((......)))))))).))..(((..((((((.((((((.........))))))((((....)).)).......))))......))..)))....... ( -29.70, z-score = -0.68, R) >droEre2.scaffold_4644 1068610 99 - 2521924 UACGAGCGAGCCUACGAUUUAUUUCGGAUCGUACAACUGGAGUGAGAUGUGACCCCAAGGGAAGGUCA-UGUGGAAGGCUGUGGCUAAUGCAGUAACAUC------------- (((..((.(((((.(..((((((((((.........))))))))))((((((((((...))..)))))-))).).))))))).((....)).))).....------------- ( -25.20, z-score = 0.03, R) >droYak2.chrX 997690 100 - 21770863 UACGAUCGAGCCCACGAUUUAUUUCGGCUCGUACAACUGGAGCGAGUUGUGACCCCACGAGAAGGUCGUUGGCUCUGGCUCAAUUCAGUUUUUUUACAUC------------- ...(((((((((.(((((((.(((((((((((.(.....).)))))))(((....)))))))))))))).))))).)).))...................------------- ( -30.00, z-score = -1.65, R) >droSec1.super_10 915199 112 - 3036183 UACGAUCGAGCUUACGAUUUAUUUUGGCUCGAUCAACUGGAGCGUGCAGUGACCCCACGAGAAGGUCACUGGCUUCGUCUCAAUGCAGUUCUC-AUUAUGUGACAGAAACAUC ...(((((((((.............)))))))))..(((..(((((((((((((.........))))))))(((.(((....))).)))....-..)))))..)))....... ( -36.32, z-score = -2.47, R) >consensus UACGAUCGAGCCUACGAUUUAUUUCGGCUCGUACAACUGGAGCGAGAUGUGACCCCACGAGAAGGUCACUGGCUUUGGCUCAAUACAGUUCUCUAACAUC_____________ ...((((((((...(((......)))))))))))..(((((((.....((((((.........))))))..)))))))................................... (-18.40 = -20.53 + 2.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:14 2011