| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,075,885 – 1,075,963 |
| Length | 78 |
| Max. P | 0.782982 |
| Location | 1,075,885 – 1,075,963 |
|---|---|
| Length | 78 |
| Sequences | 3 |
| Columns | 80 |
| Reading direction | forward |
| Mean pairwise identity | 88.66 |
| Shannon entropy | 0.15756 |
| G+C content | 0.37023 |
| Mean single sequence MFE | -14.00 |
| Consensus MFE | -15.25 |
| Energy contribution | -15.03 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -0.30 |
| Structure conservation index | 1.09 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.782982 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1075885 78 + 22422827 --UUCCAAAAUAUCUGACCUUCGUGUUGCAGAAUUAACUAAGCUGCUAUAGCAGAUAUAGUUCAGUUACAAGUGCAGCUU --......................((((((.(((((((((..((((....))))...))))).)))).....)))))).. ( -16.30, z-score = -0.80, R) >droSim1.chrX_random 880093 79 + 5698898 CUCCAAAAAAAAUUUGUCCUUCGUGUUGCAGAAUUAACUAAACUGCUA-AGCAGAUAUAGUUCAGUUAGAAGUGCGGCUU ........................((((((...((((((.(((((.((-......))))))).))))))...)))))).. ( -13.10, z-score = 0.02, R) >droSec1.super_10 906553 78 + 3036183 -CCCAAAAAAAAUUUGUCCUUCGUGUUGCAGAAUUAACUAAACUGCUA-AGCAGAUAUAGUUCAGUUACAAGUGCGGCUU -.......................((((((.(((((((((..((((..-.))))...))))).)))).....)))))).. ( -12.60, z-score = -0.10, R) >consensus __CCAAAAAAAAUUUGUCCUUCGUGUUGCAGAAUUAACUAAACUGCUA_AGCAGAUAUAGUUCAGUUACAAGUGCGGCUU ........................((((((.(((((((((..((((....))))...))))).)))).....)))))).. (-15.25 = -15.03 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:13 2011