| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,046,601 – 1,046,671 |
| Length | 70 |
| Max. P | 0.998800 |
| Location | 1,046,601 – 1,046,671 |
|---|---|
| Length | 70 |
| Sequences | 3 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 77.20 |
| Shannon entropy | 0.28861 |
| G+C content | 0.54268 |
| Mean single sequence MFE | -13.67 |
| Consensus MFE | -13.53 |
| Energy contribution | -13.53 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.57 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.50 |
| SVM RNA-class probability | 0.998800 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1046601 70 + 22422827 UGCUGCUCGUUUCCAAAAAAUGUGAGCCGCGCUCCUUUAAUGAGCACCCCCCCCCCUCCCCCUAUCACAC .((.(((((.............))))).))((((.......))))......................... ( -12.42, z-score = -3.49, R) >droSec1.super_10 876366 53 + 3036183 UGCUGCUCGUGUCCAAAAAAUGUGAGCCGCGCUCCUUUAAUGAGCCCCCACAA----------------- .((.(((((..(.......)..))))).))((((.......))))........----------------- ( -14.30, z-score = -3.61, R) >droSim1.chrX 836446 53 + 17042790 UGCUGCUCGUGUCCAAAAAAUGUGAGCCGCGCUCCUUUAAUGAGCCCCCACAA----------------- .((.(((((..(.......)..))))).))((((.......))))........----------------- ( -14.30, z-score = -3.61, R) >consensus UGCUGCUCGUGUCCAAAAAAUGUGAGCCGCGCUCCUUUAAUGAGCCCCCACAA_________________ .((.(((((..(.......)..))))).))((((.......))))......................... (-13.53 = -13.53 + -0.00)
| Location | 1,046,601 – 1,046,671 |
|---|---|
| Length | 70 |
| Sequences | 3 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 77.20 |
| Shannon entropy | 0.28861 |
| G+C content | 0.54268 |
| Mean single sequence MFE | -13.83 |
| Consensus MFE | -12.70 |
| Energy contribution | -12.70 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.77 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.590382 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1046601 70 - 22422827 GUGUGAUAGGGGGAGGGGGGGGGGUGCUCAUUAAAGGAGCGCGGCUCACAUUUUUUGGAAACGAGCAGCA .(((.....((((((...(((..((((((.......))))))..)))...))))))(....)..)))... ( -16.10, z-score = -0.73, R) >droSec1.super_10 876366 53 - 3036183 -----------------UUGUGGGGGCUCAUUAAAGGAGCGCGGCUCACAUUUUUUGGACACGAGCAGCA -----------------........((((.......))))((.((((.((.....)).....)))).)). ( -12.70, z-score = -0.79, R) >droSim1.chrX 836446 53 - 17042790 -----------------UUGUGGGGGCUCAUUAAAGGAGCGCGGCUCACAUUUUUUGGACACGAGCAGCA -----------------........((((.......))))((.((((.((.....)).....)))).)). ( -12.70, z-score = -0.79, R) >consensus _________________UUGUGGGGGCUCAUUAAAGGAGCGCGGCUCACAUUUUUUGGACACGAGCAGCA .........................((((.......))))((.((((.((.....)).....)))).)). (-12.70 = -12.70 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:09 2011