| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,028,151 – 1,028,244 |
| Length | 93 |
| Max. P | 0.882906 |
| Location | 1,028,151 – 1,028,244 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 85.80 |
| Shannon entropy | 0.23687 |
| G+C content | 0.51988 |
| Mean single sequence MFE | -30.42 |
| Consensus MFE | -21.14 |
| Energy contribution | -21.38 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.882906 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1028151 93 - 22422827 -GGAAAGUGGUCAAAGG-------AGAAGGAGGAGGUAAGUCAAAUAAGUGAAAUGUUCUCUCUUUGGCCUUCCGUUUGCGUGGGUGCGAGCGAGAUGGCG -.....((.(((.((((-------.(((((((((.((...(((......))).)).))))).))))..)))).((((((((....)))))))).))).)). ( -29.40, z-score = -2.39, R) >droSim1.chrX 817181 94 - 17042790 GGAAAAGUGGUCAAAGG-------AGAAGGAGGAGGUAAGUCAAAUAAGUGAAAUGUUCUCUCUUUGGCCUUCCGUUUGCGUGGGUGCGAGCGAGAUGGCG ......((.(((.((((-------.(((((((((.((...(((......))).)).))))).))))..)))).((((((((....)))))))).))).)). ( -29.40, z-score = -2.32, R) >droSec1.super_10 854984 94 - 3036183 GGAAAAGUGGUCAAAGG-------AGAAGGAGGAGGUAAGUCAAAUAAGGGAAAUGUUCUCUCUUUGGCCUUCUGUUUGCGUGGGUGCGAGCGAGAUGGCG ......((.(((.((((-------.(((((((((.((...((........)).)).))))).))))..)))).((((((((....)))))))).))).)). ( -26.20, z-score = -1.40, R) >droYak2.chrX 940627 91 - 21770863 GGAAAAGUGGCCAAAGG-AAAAGAAGGAGGAGGAGGUGAGUCAAACGAGUGAAAUGUUCU---------CUCCCGUUUGCGUGGGUGCGAGCGGGAUGCCG ........(((......-...........(((((.((...(((......))).)).))))---------)(((((((((((....))))))))))).))). ( -29.40, z-score = -2.27, R) >droEre2.scaffold_4644 1010599 101 - 2521924 GGAGAAGUGGCCAAAGGAAAAAGAAGGAGGAGGAGGUGAGUCAAAUGAGUGAAAUGUUCUCUCUUUGGCCUCCCGUUUGCGUGGGUGCGAGCGGGAUGGCG ......((((((((((............((((((.((...(((......))).)).))))))))))))))(((((((((((....)))))))))))..)). ( -37.70, z-score = -3.46, R) >consensus GGAAAAGUGGUCAAAGG_______AGAAGGAGGAGGUAAGUCAAAUAAGUGAAAUGUUCUCUCUUUGGCCUUCCGUUUGCGUGGGUGCGAGCGAGAUGGCG .........((((............(((((.(((((....(((......))).....)))))......)))))((((((((....))))))))...)))). (-21.14 = -21.38 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:05 2011