| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,027,502 – 1,027,604 |
| Length | 102 |
| Max. P | 0.715072 |
| Location | 1,027,502 – 1,027,604 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 81.04 |
| Shannon entropy | 0.30844 |
| G+C content | 0.41456 |
| Mean single sequence MFE | -26.48 |
| Consensus MFE | -13.48 |
| Energy contribution | -16.76 |
| Covariance contribution | 3.28 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.715072 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1027502 102 + 22422827 GAAAAAUAAAACCGAGCAGAAUCGAGAGCGAAAGGCAGCUUUCCUGCCGUUGCUCGACCGAG-CAAAGUGCAAUGCCAACCGCAUUUUUAUUUAUUUUUCAUG----- ((((((((((..(((((((..(((....)))..(((((.....))))).)))))))......-.(((((((..........)))))))..))))))))))...----- ( -31.40, z-score = -3.56, R) >droEre2.scaffold_4644 1009925 100 + 2521924 -GAAUAUAAAAACU-GCAGAAUCGAGAGCGAAAGGCAGC------AGGAAAACUCGAGAAAAACAAAGUGCAAUGCCAACCGCAUUUCUGUUUUAUUUAUUUAUUUUU -(((.(((((..((-((.....(....)(....)...))------))........(((.((((((((((((..........)))))).)))))).))).))))).))) ( -15.50, z-score = 0.38, R) >droYak2.chrX 939949 95 + 21770863 -GAAAAUAAAAACU-GCAGAAUCGAGAGCGAAAGGCAGC------AGGAAAACUCGAGCAAAGCAAAGUGCAAUGCCAACCGCAUUUUUAUUUAUUUUUCAUG----- -..(((((((((.(-((....(((....)))..((((((------..((....))..))...((.....))..))))....))))))))))))..........----- ( -19.40, z-score = -0.75, R) >droSec1.super_10 854368 102 + 3036183 GAAAAAUAAAACCGAGCAGAAUCGAGAGCGAACGGCAGCUUUCCUGCCGUUGCUCGACCGAG-CAAAGUGCAAUGCCAACCGCAUUUUUAUUUAUUUUUCAUG----- ((((((((((.....(((...(((.((((.((((((((.....))))))))))))...))).-.....)))(((((.....)))))....))))))))))...----- ( -34.70, z-score = -4.60, R) >droSim1.chrX 816560 102 + 17042790 GAAAAAUAAAACCGAGCAGAAUCGAGAGCGAAAGGCAGCUUUCCUGCCGUUGCUCGACCGAG-CAAAGUGCAAUGCCAACCGCAUUUUUAUUUAUUUUUCAUG----- ((((((((((..(((((((..(((....)))..(((((.....))))).)))))))......-.(((((((..........)))))))..))))))))))...----- ( -31.40, z-score = -3.56, R) >consensus GAAAAAUAAAACCGAGCAGAAUCGAGAGCGAAAGGCAGCUUUCCUGCCGUUGCUCGACCGAG_CAAAGUGCAAUGCCAACCGCAUUUUUAUUUAUUUUUCAUG_____ ((((((((((...........(((((.......(((((.....)))))....))))).......(((((((..........)))))))..))))))))))........ (-13.48 = -16.76 + 3.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:04 2011