| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,021,878 – 1,021,975 |
| Length | 97 |
| Max. P | 0.814346 |
| Location | 1,021,878 – 1,021,975 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 85.14 |
| Shannon entropy | 0.23255 |
| G+C content | 0.46117 |
| Mean single sequence MFE | -34.12 |
| Consensus MFE | -25.08 |
| Energy contribution | -25.95 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.814346 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1021878 97 + 22422827 CAUGUGGCUGGUGGCUGGUCCCCUUGUUUAUGUGUCUGCUAUA--------UAUGUAUGUA----CAUAUGUGAACGGCCACAUAGUGCAAGUUGCCAGCUUCUCAAUU ..((.((((((..(((((...)).((((((((((.(((.((((--------(((((....)----))))))))..))).))))))).))))))..))))))...))... ( -34.20, z-score = -2.34, R) >droEre2.scaffold_4644 1004327 102 + 2521924 -------CAUGUGGCUGGUCCCCUUGUUUAUGUGUCUGCUAUGGAUGUGUAUAUGUAUGGAUAUGUGUUUGUGAACGGCCACAUAGUGCAAGUUGCCAGCUUCUCAAUU -------..((.(((((((...((((((((((((.(((.((..((((..(((........)))..))))..))..))).))))))).)))))..)))))))...))... ( -32.30, z-score = -1.87, R) >droSec1.super_10 848859 101 + 3036183 CAUGUGGCUGGUGGCUGGUCCCCUUGUUUAUGUGUCUGCUGUG--------UAUGUAUGUAUGUACAUAUGAGAACGGCCACAUAGUGCAAGUUGCCAGCUUCUCAAUU ..((.((((((..(((((...)).((((((((((...((((((--------(((((((....))))))))....)))))))))))).))))))..))))))...))... ( -35.30, z-score = -2.09, R) >droSim1.chrX 811007 97 + 17042790 CAUGUGGCUGGUGGCUGGUCCCCUUGUUUAUGUGUCUGCUGUG--------UAUGUAUGUA----CAUAUGCGAACGGCCACAUAGUGCAAGUUGCCAGCUUCUCAAUU ..((.((((((..(((((...)).((((((((((.(((.((((--------(((((....)----))))))))..))).))))))).))))))..))))))...))... ( -34.70, z-score = -2.01, R) >consensus CAUGUGGCUGGUGGCUGGUCCCCUUGUUUAUGUGUCUGCUAUG________UAUGUAUGUA____CAUAUGUGAACGGCCACAUAGUGCAAGUUGCCAGCUUCUCAAUU ..........(.(((((((...((((((((((((...(((((.........((((((((......)))))))).)))))))))))).)))))..))))))).)...... (-25.08 = -25.95 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:03 2011