| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,019,496 – 1,019,608 |
| Length | 112 |
| Max. P | 0.569950 |
| Location | 1,019,496 – 1,019,608 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 66.15 |
| Shannon entropy | 0.59134 |
| G+C content | 0.41521 |
| Mean single sequence MFE | -26.02 |
| Consensus MFE | -11.00 |
| Energy contribution | -9.88 |
| Covariance contribution | -1.12 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.569950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1019496 112 + 22422827 GAUGGUAAUG-UUUUGCACUGCACUUGAUCUGA-UCUCGUUGAUCCGGCUGAUCAGUUGCA------UGAAAUAAAAAUACUGAUUGAAGGAUCCAUCCCCAUUGUUUGGUUACACAAUC (((((...((-((((.((.((((.((((((.((-((.....)))).....)))))).))))------)).....))))))((......))...))))).(((.....))).......... ( -23.30, z-score = 0.30, R) >droAna3.scaffold_12929 812613 109 + 3277472 ---GAGGAUCACUUGCCACUGCACUUGAGAAAAGUCUCUUUGAGAAAGUGUCUCAAGUGCAAGGCUUUAAAUUUCAUAAAAUAAUCCACCUUUUAAUCCUUCUCCCUCAACU-------- ---((((.......(((..(((((((((((....((((...)))).....))))))))))).)))...........(((((.........))))).........))))....-------- ( -30.60, z-score = -4.16, R) >droEre2.scaffold_4644 1001976 99 + 2521924 UCUGAUAAUGACUCUGCACUGCACUUGAUCUGA-UCUCGUUGAACCGGCUGAUCAGUUGCACA----UACAACACACAUACCGAUCGAUUGUUCGGUUAC--UUGA-------------- ...............((...(((.(((((((((-((..((((...)))).)))))((((....----..)))).........)))))).)))...))...--....-------------- ( -18.00, z-score = 0.56, R) >droSec1.super_10 846521 112 + 3036183 GAUGGUAAUGACUCUGCACUGCACUUGAUCUGA-UCUCGUUGAUCCGGCUGAUCAGUUGCA------UGCAAUAGAAAUCCUGAUUGAAGGAUCCAUCCCCAUUGUU-AAUUACUCAAUC (((((..(((....((((.((((.((((((.((-((.....)))).....)))))).))))------))))......(((((......))))).)))..)))))...-............ ( -31.20, z-score = -2.15, R) >droSim1.chrX 808623 113 + 17042790 GAUGGUAAUGACUCUGCACUGCACUUGAUCUGA-UCUCGUUGAUCCGGCUGAUCAGUUGCA------UGCAAUAGAAAUACUGAUUGAAGGAUCCAUCCCCAUUGUUUAAUUACUCAAUC (((((..(((..((((((.((((.((((((.((-((.....)))).....)))))).))))------)))).........((......))))..)))..)))))................ ( -27.00, z-score = -0.97, R) >consensus GAUGGUAAUGACUCUGCACUGCACUUGAUCUGA_UCUCGUUGAUCCGGCUGAUCAGUUGCA______UGCAAUACAAAUACUGAUUGAAGGAUCCAUCCCCAUUGUU_AAUUAC_CAAUC ...................((((.((((((.(..((.....)).....).)))))).))))........................................................... (-11.00 = -9.88 + -1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:02 2011