| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,018,691 – 1,018,810 |
| Length | 119 |
| Max. P | 0.539296 |
| Location | 1,018,691 – 1,018,810 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 85.24 |
| Shannon entropy | 0.26499 |
| G+C content | 0.39442 |
| Mean single sequence MFE | -27.50 |
| Consensus MFE | -19.74 |
| Energy contribution | -19.98 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.539296 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1018691 119 - 22422827 UUCCUUUUUUAUUUCUUAUUUUUUAUUAAGGGGGGGCUAGAAGGAGGGGGAAAGUUGCCCAAGGCAACUUCAUUUUCAUUUCCAUUUCCAUUUUCAUCUCGAUCUCGACAGCUUCGCUA ..(((((..((............))..)))))((((((....(((((.(((((((((((...)))))))..........)))).))))).........(((....))).)))))).... ( -28.40, z-score = -0.91, R) >droEre2.scaffold_4644 1001221 97 - 2521924 ------------------UUUUUUAUUCA-AGGGGGCUAGA---AGGGGGAAAGUUGCCCAAGGCAACUUCAUUUUCAUUUCCAUUUUCAUUUUCAUCUCGAUCUCGAGAGCUCCCCUU ------------------..........(-(((((((..((---(((.(((((((((((...)))))))..........)))).))))).......(((((....))))))).)))))) ( -33.00, z-score = -3.43, R) >droYak2.chrX 931062 115 - 21770863 UUUUUUUUCCAUUUUAGUUUUUUUAUUCA-AGGGGGCUAGA---AGGGGGAAAGUUGCCCAAGGCACCUUCAUUUUCAUUUUCAUUUCCAUUUUCAUCUCGAUCUCGAGAGCACCGCUU .(((((..((.(((((((((((((....)-)))))))))))---)))..))))).((((...))))..............................(((((....)))))......... ( -25.70, z-score = -1.20, R) >droSec1.super_10 845734 114 - 3036183 UUCCUUUUUUAUUUCUUAUUUUUUAUUAA--GGGGGCCAGA---AGGGGGAAAGUUGCCCAAGGCAACUUAAUUUUCAUUUUCAUUUCCAUUUUCAUCUCGAUCUCGACAGCUCCGCUU .(((((((...(..((((........)))--)..)...)))---))))(((((((((((...))))))))............................(((....)))....))).... ( -25.50, z-score = -1.34, R) >droSim1.chrX 807836 114 - 17042790 UUCCUUUUUUAUUUCUUAUUUUUUAUUAA--GGGGGCCAGA---AGGGGGAAAGUUGCCCAAGGCAACUUCAUUUUCAUUUUCAUUUCCAUUUUCAUCUCGAUCUCGACAGCUCCGCUU .(((((((...(..((((........)))--)..)...)))---))))(((((((((((...))))))))............................(((....)))....))).... ( -24.90, z-score = -1.24, R) >consensus UUCCUUUUUUAUUUCUUAUUUUUUAUUAA__GGGGGCUAGA___AGGGGGAAAGUUGCCCAAGGCAACUUCAUUUUCAUUUUCAUUUCCAUUUUCAUCUCGAUCUCGACAGCUCCGCUU ................................(((((.........(..((((((((((...))))))))..))..).....................(((....)))..))))).... (-19.74 = -19.98 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:05:02 2011