| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,010,310 – 1,010,407 |
| Length | 97 |
| Max. P | 0.859375 |
| Location | 1,010,310 – 1,010,407 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 91.13 |
| Shannon entropy | 0.15300 |
| G+C content | 0.39588 |
| Mean single sequence MFE | -22.04 |
| Consensus MFE | -18.92 |
| Energy contribution | -19.04 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.859375 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1010310 97 + 22422827 GAGUUCUGGCAAAGUAGCGUUCCGUUGCUCCAAAUAGAAAAUAGAAAUUCUCAACAAUGCCAAAAAUGUGGCAAAUUCCGAUAGGAAACUCAAGACG ((((((((....(((((((...))))))).....))))...................(((((......)))))..((((....))))))))...... ( -21.70, z-score = -1.97, R) >droSim1.chrX_random 875451 97 + 5698898 GAGUUCUGGCAAAGUAGCGUUCCGUUGCUCCAAAUAUAAAAUAGAAAUUCUCAACAAUGCCAAAAAUGUGGCAAAUUCCGAUAGGGAACUCAAGACG (((((((((...(((((((...)))))))))).........................(((((......)))))....((....))))))))...... ( -23.10, z-score = -2.29, R) >droSec1.super_10 837501 97 + 3036183 GAGUUCUGGCAAAGUAGCGUUCCGUUGCUCCAAAUAUAAAAUAGAAAUUCUCAACAAUGCCAAAAAUGUGGCAAAUUCCGAUAGGGAACUCAAGACG (((((((((...(((((((...)))))))))).........................(((((......)))))....((....))))))))...... ( -23.10, z-score = -2.29, R) >droYak2.chrX 922505 97 + 21770863 GAGUUCUGGUAGAGUAACGUUGUGUUGCCUCAAAUAUAAAAUAGAAAUUCUUAACAAUGCCAAAAACGUGGCGAAUUCCGAAAGGCAACUCAAGAGG (((((.((..(((((..(.(((((((......)))))))....)..)))))...)).(((((......)))))....((....)).)))))...... ( -19.80, z-score = -0.96, R) >droEre2.scaffold_4644 992725 97 + 2521924 GAGUUCUGGUAGAGGAACGUUGUGUUGCUUCAAAUAUAAAAUAGAAAUUCUCAACAAUGCCAAAAACGUGGCAAAUUCCGAAAGGGAUCUCAAGAAG (((.....((.(((((.(.(((((((......)))))))....)...))))).))..(((((......))))).(((((....))))))))...... ( -22.50, z-score = -1.98, R) >consensus GAGUUCUGGCAAAGUAGCGUUCCGUUGCUCCAAAUAUAAAAUAGAAAUUCUCAACAAUGCCAAAAAUGUGGCAAAUUCCGAUAGGGAACUCAAGACG (((((((((...(((((((...)))))))))).........................(((((......)))))....((....))))))))...... (-18.92 = -19.04 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:59 2011