| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,543,793 – 9,543,846 |
| Length | 53 |
| Max. P | 0.815940 |
| Location | 9,543,793 – 9,543,846 |
|---|---|
| Length | 53 |
| Sequences | 3 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 93.71 |
| Shannon entropy | 0.08663 |
| G+C content | 0.33539 |
| Mean single sequence MFE | -4.88 |
| Consensus MFE | -4.72 |
| Energy contribution | -4.84 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.815940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9543793 53 + 23011544 AGAAAAAUAUAAGCCAAGUGAAGAAAAACCACAUUAUGACAGUUCACAAGUGU .................(((((....................)))))...... ( -2.45, z-score = 0.49, R) >droSec1.super_3 4991102 52 + 7220098 AGAAAAAUAUAAGCCAAGUGAACAAAAAC-ACAUUAUGCCAGUUCACAAGAGU .................((((((......-...........))))))...... ( -6.13, z-score = -2.32, R) >droSim1.chr2L 9315773 53 + 22036055 AGAAAAAUAUAAGCCAAGUGAGCAAAAACCACAUUAUGCCAGUUCACAAGAGU .................((((((..................))))))...... ( -6.07, z-score = -2.14, R) >consensus AGAAAAAUAUAAGCCAAGUGAACAAAAACCACAUUAUGCCAGUUCACAAGAGU .................((((((..................))))))...... ( -4.72 = -4.84 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:30 2011