| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,003,647 – 1,003,703 |
| Length | 56 |
| Max. P | 0.934076 |
| Location | 1,003,647 – 1,003,703 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 77.05 |
| Shannon entropy | 0.35954 |
| G+C content | 0.42205 |
| Mean single sequence MFE | -17.32 |
| Consensus MFE | -14.32 |
| Energy contribution | -14.70 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.934076 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1003647 56 + 22422827 ------UUGGAAUCGGAAUCGGAGACAUGUUCCAUGUUGACGUGGAAUUUUCCAGAUUUUCC ------..(((....((((((((((...((((((((....))))))))))))).)))))))) ( -18.00, z-score = -1.88, R) >droSec1.super_10 830843 62 + 3036183 UUGGAAUCGGAAUCGGAAUCGGAGACAUGUUCCAUGUUGACGUGGAAUUUUCCAGAUUUUCC ..(((....(((((((((..(....)..((((((((....)))))))).)))).)))))))) ( -18.50, z-score = -1.04, R) >droEre2.scaffold_661 3370 62 + 3767 UCGGAAUCAGAAUCGGAAUCGGAGACAUGUUCCAUGUUGACGUGGAAUUUUCCAGAUUUCCC ..............(((((((((((...((((((((....))))))))))))).)))))).. ( -19.50, z-score = -1.41, R) >droAna3.scaffold_12929 794434 51 + 3277472 ------UUGAAAUCAAAGUCGGAA-----UCUCAUGUUGACGUGGAAUUAUUCCGAUUUCCU ------.........(((((((((-----(.(((((....)))))....))))))))))... ( -13.30, z-score = -1.89, R) >consensus ______UCGGAAUCGGAAUCGGAGACAUGUUCCAUGUUGACGUGGAAUUUUCCAGAUUUCCC ..............(((((((((((...((((((((....))))))))))))).)))))).. (-14.32 = -14.70 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:56 2011