| Sequence ID | dm3.chrX |
|---|---|
| Location | 999,604 – 999,698 |
| Length | 94 |
| Max. P | 0.802159 |
| Location | 999,604 – 999,698 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 94.50 |
| Shannon entropy | 0.09561 |
| G+C content | 0.43549 |
| Mean single sequence MFE | -17.17 |
| Consensus MFE | -16.59 |
| Energy contribution | -16.43 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.802159 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 999604 94 + 22422827 GAAAUAUUAAAAUAAAAGGUGAUACCUCU------CCGCCGCUUGCCCACCUUUUCUCAUUUUCCGCUUCGAAUAAUAUGAAUGCCUUUCGAGCGGCCUU .................((.((....)).------))((((((((........(((..((((((......))).)))..))).......))))))))... ( -17.56, z-score = -1.26, R) >droSim1.chrX_random 862348 93 + 5698898 GAAAUAUUAAAAUAAGAGGUGAUACCUC-------CCGCCGUUUGCCCACCUUUUCCCAUUUUCCGCUUCGAAUAAUAUGAAUGCCUUUCGAGCGGCCUU .............((((((((.......-------............))))))))........(((((.((((..............))))))))).... ( -16.85, z-score = -0.96, R) >droSec1.super_10 826800 94 + 3036183 GAAAUAUUAAAAUAAAAGGUGAUACCUCU------CCGCCGUUUGCCCACCUUUUCCCAUUUUCCGCUUCGAAUAAUAUGAAUGCCUUUCGAGCGGCCUU .............((((((((........------............))))))))........(((((.((((..............))))))))).... ( -16.69, z-score = -1.15, R) >droYak2.chrX 910075 100 + 21770863 GAAAUAUUAAAAUAAAAGGUGAUACCUCCACCUCACCGCCGCCUGCCCACCUUUUCCCAUUUUCCGCAUCGAAUAAUAUGAAUGCCUUUCGAGCGGCCUU .................(((((..........)))))(((((.(((...................)))(((((..............))))))))))... ( -18.05, z-score = -1.82, R) >droEre2.scaffold_4644 977203 94 + 2521924 GAAAUAUUAAAAUAAAAGGUGAUACCUCU------CCGCCGUUUGCCCACCUUUUCCCAUUUUCCGCUUCGAAUAAUAUGAAUGCCUUUCGAGCGGCCUU .............((((((((........------............))))))))........(((((.((((..............))))))))).... ( -16.69, z-score = -1.15, R) >consensus GAAAUAUUAAAAUAAAAGGUGAUACCUCU______CCGCCGUUUGCCCACCUUUUCCCAUUUUCCGCUUCGAAUAAUAUGAAUGCCUUUCGAGCGGCCUU .............((((((((..........................))))))))........((((.(((((..............))))))))).... (-16.59 = -16.43 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:53 2011