| Sequence ID | dm3.chrX |
|---|---|
| Location | 985,153 – 985,306 |
| Length | 153 |
| Max. P | 0.717858 |
| Location | 985,153 – 985,306 |
|---|---|
| Length | 153 |
| Sequences | 3 |
| Columns | 172 |
| Reading direction | forward |
| Mean pairwise identity | 83.63 |
| Shannon entropy | 0.22424 |
| G+C content | 0.46829 |
| Mean single sequence MFE | -54.17 |
| Consensus MFE | -34.76 |
| Energy contribution | -35.33 |
| Covariance contribution | 0.57 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.717858 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 985153 153 + 22422827 GGCGCGUGUUCCCAGCCAGAUACAUUCAUGUAUGUAUGCACAUGUACAUAUGUACAAGUAUGUGGUCCGAAAGGGUAUACCACAUGCCCGGGACAUCGACCCGUUGCCAAUUCUUUUUAGCGCGUU-UGUA------------------GUUUGUAUUAGCAAACUCCUCAG .(((((((((((..((...((((((......))))))))...(((((....))))).(((((((((((....))....)))))))))..)))))))(((....))).............))))...-.(.(------------------((((((....))))))).).... ( -46.50, z-score = -2.07, R) >droSec1.super_10 812352 169 + 3036183 GGCGCGUGUUCCCAGCCAGAUACAUUCAUAUGUGUAUGAACAUAUC--UAUGUGCAAGUGUGUGAUCCGAAAGGGUAUAC-ACAUGCCGGGGACAUCGGCUCGUUGACAAUUCUUUUUAGGGUGUAAUAUAUGCGACUAAACUCAGCGCGUUUGGAUCAGCAAACUCCUGAG (((((((((...((.(((((((..((((((....))))))..))))--).(((.((((((((((((((....)))).)))-))))(((((.....)))))...))))))..........)).))....))))))).))...(((((.(.(((((......))))).)))))) ( -56.90, z-score = -2.43, R) >droSim1.chrX 792465 169 + 17042790 GGCGCGUGUUCCCAGCCAGAUACAUUCGUAUAUGUAUGCACAUAUC--UAUGUGCAAGUGUGUGGUCCGAAAGGGUAUAC-ACAUGCCGGGGACAUCGGCUCGUUGCCAAUUCUUUUUAGGGUGUAAUAUAUGCGACUAAACUCAGCGCGUUUGGAUCAGCAAACUCCUGAG (((((((((((((.((...((((((......))))))((((((...--.))))))..(((((((..((....))...)))-)))))).)))))))).(((.....))).(((((....))))).........))).))...(((((.(.(((((......))))).)))))) ( -59.10, z-score = -2.47, R) >consensus GGCGCGUGUUCCCAGCCAGAUACAUUCAUAUAUGUAUGCACAUAUC__UAUGUGCAAGUGUGUGGUCCGAAAGGGUAUAC_ACAUGCCGGGGACAUCGGCUCGUUGCCAAUUCUUUUUAGGGUGUAAUAUAUGCGACUAAACUCAGCGCGUUUGGAUCAGCAAACUCCUGAG .((((((((((((.....(.(((((....((((((....))))))....))))))..((((((.((((....)))).....)))))).))))))))(((....)))...............))))................(((((.(.(((((......))))).)))))) (-34.76 = -35.33 + 0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:49 2011