| Sequence ID | dm3.chrX |
|---|---|
| Location | 978,989 – 979,040 |
| Length | 51 |
| Max. P | 0.601694 |
| Location | 978,989 – 979,040 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 60.13 |
| Shannon entropy | 0.55325 |
| G+C content | 0.58824 |
| Mean single sequence MFE | -14.61 |
| Consensus MFE | -8.66 |
| Energy contribution | -6.67 |
| Covariance contribution | -1.99 |
| Combinations/Pair | 1.58 |
| Mean z-score | -0.74 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.601694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 978989 51 + 22422827 ACAGCAAAGUCGCCAAAAAGGUGGGGCUGCGGCCAGGGGCGUGGCAUAGGG .........(((((.....))))).((..((.(....).))..))...... ( -16.40, z-score = -0.57, R) >droSec1.super_10 806291 51 + 3036183 ACAGCAAAGUCACCAAAAAGGUGGGGCGGCGGCCAGGGGCGUGGCAUUGGG ....(((..(((((.....))))).((.(((.(....).))).)).))).. ( -16.40, z-score = -1.03, R) >anoGam1.chr2R 34172653 51 - 62725911 ACUUUACUCUCGCCAGUGCGGAGGUGAUAAAUUGAAGUGAGAGACGUGAAG .((((((((((((((((.............))))..))))))...)))))) ( -11.02, z-score = -0.63, R) >consensus ACAGCAAAGUCGCCAAAAAGGUGGGGCUGCGGCCAGGGGCGUGGCAUAGGG .((((....(((((.....)))))(((....)))....)).))........ ( -8.66 = -6.67 + -1.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:48 2011