| Sequence ID | dm3.chrX |
|---|---|
| Location | 975,496 – 975,590 |
| Length | 94 |
| Max. P | 0.772604 |
| Location | 975,496 – 975,590 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 75.52 |
| Shannon entropy | 0.41489 |
| G+C content | 0.42433 |
| Mean single sequence MFE | -21.64 |
| Consensus MFE | -10.58 |
| Energy contribution | -11.06 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.772604 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 975496 94 + 22422827 GGUGCCCCUUCGCAUCCACGUGCUUCAGCUUCAAUUGCCAUUAGAAGUUCAGUAAAUGAACAUUUAAUUUCAAUUAACGAUGGCGGGGCAGGCA ..((((((...((((....))))....((((((((((..((((((.(((((.....))))).))))))..)))))...)).))))))))).... ( -28.90, z-score = -2.32, R) >droSim1.chrX 781785 81 + 17042790 GGUGCCCCU-CGCAUCCACGUGCUUCAGCUUCAAUUGCCAUUAGAAGUUCAGUAAAUGAACAUUUAAUUUCAAUUAACGGCA------------ ..((((...-.((((....)))).........(((((..((((((.(((((.....))))).))))))..)))))...))))------------ ( -18.70, z-score = -2.25, R) >droSec1.super_10 802860 94 + 3036183 GGUGCCCCCUCGCAUCCACGUGCUUCAGCUUCAAUUGCCAUUAGAAGUUCAGUAAAUGAACAUUUAAUUUCAAUUAACGGCAGCGGGGCAGGCA ..((((((((.((((....))))....(((..(((((..((((((.(((((.....))))).))))))..)))))...))))).)))))).... ( -29.70, z-score = -2.49, R) >droYak2.chrX 884296 75 + 21770863 ---------------GCUCUUUCAUGUGCUUCAAUUGCCAUUAGAAGUUCAGUAAAUGAACAUUUAAUUUCAAUUAACCGCAGCGGGACA---- ---------------..(((..(.((((.((.(((((..((((((.(((((.....))))).))))))..))))))).)))))..)))..---- ( -16.40, z-score = -1.80, R) >droEre2.scaffold_4644 953210 79 + 2521924 -----------GCUUAUACAUCCACGUGCUUCAGUUGCCAUUAGAACUUCAGUAAAUGAACAUUUAAUUUCAAUUAACCGCAGCGGGACA---- -----------.........(((.(((((...(((((..((((((..((((.....))))..))))))..)))))....))).)))))..---- ( -14.50, z-score = -1.38, R) >consensus GGUGCCCC__CGCAUCCACGUGCUUCAGCUUCAAUUGCCAUUAGAAGUUCAGUAAAUGAACAUUUAAUUUCAAUUAACGGCAGCGGGACA____ ...........................(((..(((((..((((((.(((((.....))))).))))))..)))))...)))............. (-10.58 = -11.06 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:47 2011