| Sequence ID | dm3.chrX |
|---|---|
| Location | 928,168 – 928,266 |
| Length | 98 |
| Max. P | 0.881770 |
| Location | 928,168 – 928,266 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 50.88 |
| Shannon entropy | 0.85441 |
| G+C content | 0.41559 |
| Mean single sequence MFE | -24.24 |
| Consensus MFE | 0.00 |
| Energy contribution | 0.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 0.00 |
| Mean z-score | -3.46 |
| Structure conservation index | -0.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.881770 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 928168 98 + 22422827 -----GUGGCUAAUAUACGGUCAGCAAACGCCACCGGUUUGGUCGAAAGCUCUAAAGCUACAUGCAGAGCUAGACCACUUGUUGCA-AUAUCAGCAAGAAUUAA---- -----(((((...................))))).....(((((...((((((...((.....)))))))).)))))(((((((..-....)))))))......---- ( -29.11, z-score = -2.18, R) >droAna3.scaffold_10225 47464 99 + 63334 -----GAAGCUACUAAAUAGCGGAAGUA---AAUUAGAGUGGAACAACUCGGUGAAAAUACACGCCGAAGUUGAACACAUAAAAAACUUAUUAACGCAAAGAAGUAA- -----...((..((((.(.((....)).---).)))).(((...((((((((((........))))).)))))..))).................))..........- ( -22.80, z-score = -3.91, R) >dp4.Unknown_group_780 787 96 + 7331 --------AUUACUA-GCCACCAACGAA--CCACCACGUUGGGAGACGGCCAGCGAGAUAUAUGACAAAAUAGAUCAUAUAGAGUA-UUGGCAACAAGACCAAAAACG --------.(..((.-(((..(((((..--......)))))(....)))).))..)..((((((((......).)))))))(.((.-(((....))).)))....... ( -21.40, z-score = -3.73, R) >droPer1.super_86 167857 96 + 225837 --------AUUACUA-GCCACCAACGAA--CCACCACGUUGGGAGACGGCCAGCGAGAUAUAUGACAAAAUAGAUCAUAUAGAGUC-UUGGCAACAAGACCAAAAACG --------.(..((.-(((..(((((..--......)))))(....)))).))..)..((((((((......).)))))))(.(((-(((....)))))))....... ( -27.60, z-score = -5.59, R) >droVir3.scaffold_12954 477014 100 + 2014198 AUCGUAAGACUCUUAUAUAAGGCCCAAAACCCAAUACCUUGGGAAACUGCAGUCAAGCUACAUGACGAACUCAA--ACAUCUUGAG-UCGUUAAACAAAGUAA----- ...((..(((((((....)))((......(((((....))))).....))))))..))....((((((.(((((--.....)))))-))))))..........----- ( -20.30, z-score = -1.88, R) >consensus ________ACUACUA_ACAACCAACGAA__CCACCACGUUGGGAGACGGCCAUCAAGAUACAUGACGAAAUAGAUCACAUAGAGAA_UUGUCAACAAGAACAAA_A__ ............................................................................................................ ( 0.00 = 0.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:42 2011