| Sequence ID | dm3.chrX |
|---|---|
| Location | 911,381 – 911,433 |
| Length | 52 |
| Max. P | 0.518685 |
| Location | 911,381 – 911,433 |
|---|---|
| Length | 52 |
| Sequences | 6 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 78.84 |
| Shannon entropy | 0.39259 |
| G+C content | 0.39205 |
| Mean single sequence MFE | -10.62 |
| Consensus MFE | -7.24 |
| Energy contribution | -7.22 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.518685 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 911381 52 + 22422827 UUAAGCGACAGCGUUUAA-CAAAAUGUAAAUAAGUCCACCAGCUUGGUAUACA (((((((....)))))))-.....((((..(((((......)))))...)))) ( -8.40, z-score = -0.97, R) >droEre2.scaffold_4644 894175 53 + 2521924 UUAAGUGGUGGCGUUUAAGGAAAAUGUAAAUAAGUCCACCAGCUUCGUGGGCA ..........((((((.....))))))......((((((.......)))))). ( -11.10, z-score = -0.59, R) >droYak2.chrX 834203 53 + 21770863 UUAAGUGGUGGCGUUUAAGAAAAAUGUAAAUAAGUCCACCAGCUUCGUGGGCA ..........((((((.....))))))......((((((.......)))))). ( -11.10, z-score = -0.89, R) >droSec1.super_10 753428 53 + 3036183 UUAAGCGACGGCGUUUAAGCAAAAUGUAAAUAAGUUCACCAGCUUGGUGGACA (((((((....)))))))...............(((((((.....))))))). ( -15.30, z-score = -2.55, R) >droSim1.chrX 737755 53 + 17042790 UUAAGCGACGGCGUUUAAGCAAAAUGUAAAUAAGUUCACCAGCUUGGUGGACA (((((((....)))))))...............(((((((.....))))))). ( -15.30, z-score = -2.55, R) >droWil1.scaffold_181096 1760704 52 - 12416693 UUACACAAGAGCCUGUAG-CAAAAGGAAAAUAAAACUUUCAUAUUCGUAUACA ...........(((....-....)))........................... ( -2.50, z-score = 0.65, R) >consensus UUAAGCGACGGCGUUUAAGCAAAAUGUAAAUAAGUCCACCAGCUUCGUGGACA (((((((....)))))))...............((((((.......)))))). ( -7.24 = -7.22 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:04:41 2011